Information for 11-CGGGCTAA (Motif 23)


Reverse Opposite:

p-value:1e-6
log p-value:-1.496e+01
Information Content per bp:1.819
Number of Target Sequences with motif651.0
Percentage of Target Sequences with motif14.46%
Number of Background Sequences with motif5456.0
Percentage of Background Sequences with motif11.98%
Average Position of motif in Targets287.6 +/- 158.0bp
Average Position of motif in Background277.5 +/- 158.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0132.1_Pdx1/Jaspar

Match Rank:1
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CGGGCTAA--
----CTAATT

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CGGGCTAA
--NGCTN-

MA0117.1_Mafb/Jaspar

Match Rank:3
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CGGGCTAA---
---GCTGACGC

PH0131.1_Pax4/Jaspar

Match Rank:4
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CGGGCTAA--------
NNGNGCTAATTAGNTNA

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:5
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CGGGCTAA----
----CTAATKGV

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CGGGCTAA---
---GCTAATCC

MA0597.1_THAP1/Jaspar

Match Rank:7
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CGGGCTAA
TNNGGGCAG-

PH0032.1_Evx2/Jaspar

Match Rank:8
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CGGGCTAA--------
CACCGCTAATTAGCGGT

PH0015.1_Crx/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CGGGCTAA---------
-AGGCTAATCCCCAANG

PH0127.1_Nobox/Jaspar

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CGGGCTAA---------
CGCGCTAATTAGGTATC