Information for 12-TTAGTTAC (Motif 24)


Reverse Opposite:

p-value:1e-6
log p-value:-1.450e+01
Information Content per bp:1.939
Number of Target Sequences with motif318.0
Percentage of Target Sequences with motif7.06%
Number of Background Sequences with motif2433.9
Percentage of Background Sequences with motif5.34%
Average Position of motif in Targets284.0 +/- 159.3bp
Average Position of motif in Background276.3 +/- 158.2bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0159.1_Rfx4_2/Jaspar

Match Rank:1
Score:0.78
Offset:-4
Orientation:forward strand
Alignment:----TTAGTTAC---
TACCCTAGTTACCGA

PB0158.1_Rfx3_2/Jaspar

Match Rank:2
Score:0.73
Offset:-8
Orientation:forward strand
Alignment:--------TTAGTTAC-------
ACTGACCCTTGGTTACCACAAAG

PB0081.1_Tcf1_1/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---TTAGTTAC------
NNNTTAGTTAACTNANN

PH0167.1_Tcf1/Jaspar

Match Rank:4
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---TTAGTTAC------
NTTTTAGTTAACNNAGN

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:5
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TTAGTTAC---
NNAATTAGTCACGGT

PB0015.1_Foxa2_1/Jaspar

Match Rank:6
Score:0.69
Offset:-4
Orientation:reverse strand
Alignment:----TTAGTTAC-----
NNNTTTGTTTACTTTTN

PB0160.1_Rfxdc2_2/Jaspar

Match Rank:7
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----TTAGTTAC-----
CTACTTGGATACGGAAT

PH0168.1_Hnf1b/Jaspar

Match Rank:8
Score:0.68
Offset:-4
Orientation:reverse strand
Alignment:----TTAGTTAC-----
ANNNCTAGTTAACNGNN

PH0118.1_Nkx6-1_1/Jaspar

Match Rank:9
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----TTAGTTAC----
GAAAATTAATTACTTCG

PH0072.1_Hoxc8/Jaspar

Match Rank:10
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---TTAGTTAC-----
ACNNTAATTACNNCAN