Information for 17-GGCTTGGCCG (Motif 27)


Reverse Opposite:

p-value:1e-5
log p-value:-1.170e+01
Information Content per bp:1.864
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.20%
Number of Background Sequences with motif13.7
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets205.7 +/- 169.9bp
Average Position of motif in Background310.1 +/- 136.6bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0161.1_NFIC/Jaspar

Match Rank:1
Score:0.62
Offset:3
Orientation:forward strand
Alignment:GGCTTGGCCG
---TTGGCA-

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGCTTGGCCG
NGCTN-----

PB0180.1_Sp4_2/Jaspar

Match Rank:3
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----GGCTTGGCCG-
CAAAGGCGTGGCCAG

PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----GGCTTGGCCG-
NGTCACGCTTGGCTGC

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----GGCTTGGCCG-
GTCATGCHTGRCTGS

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-GGCTTGGCCG
CCGATTGGCT-

POL004.1_CCAAT-box/Jaspar

Match Rank:7
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:GGCTTGGCCG--
TGATTGGCTANN

MA0164.1_Nr2e3/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-GGCTTGGCCG
AAGCTTG----

MA0014.2_PAX5/Jaspar

Match Rank:9
Score:0.57
Offset:-4
Orientation:reverse strand
Alignment:----GGCTTGGCCG-----
GTCACGCTTGGCTGCNCNN

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:10
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GGCTTGGCCG
--CTTGGCAA