Information for 4-TCATTGTTCAAG (Motif 3)


Reverse Opposite:

p-value:1e-17
log p-value:-4.121e+01
Information Content per bp:1.852
Number of Target Sequences with motif104.0
Percentage of Target Sequences with motif2.31%
Number of Background Sequences with motif389.9
Percentage of Background Sequences with motif0.86%
Average Position of motif in Targets274.8 +/- 159.6bp
Average Position of motif in Background292.3 +/- 162.9bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0070.1_Sox30_1/Jaspar

Match Rank:1
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----TCATTGTTCAAG
ANNTCCATTGTTCNNN

PB0072.1_Sox5_1/Jaspar

Match Rank:2
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---TCATTGTTCAAG-
NNTTTATTGTTCTNNN

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.71
Offset:-1
Orientation:forward strand
Alignment:-TCATTGTTCAAG
NCCATTGTTC---

MA0077.1_SOX9/Jaspar

Match Rank:4
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TCATTGTTCAAG
CCATTGTTC---

PB0065.1_Sox15_1/Jaspar

Match Rank:5
Score:0.70
Offset:-4
Orientation:reverse strand
Alignment:----TCATTGTTCAAG-
ANNTCTATTGTTCNNNA

PB0062.1_Sox12_1/Jaspar

Match Rank:6
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TCATTGTTCAAG--
TAATTGTTCTAAAC

PB0067.1_Sox18_1/Jaspar

Match Rank:7
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--TCATTGTTCAAG--
TTCAATTGTTCTAAAA

MA0087.1_Sox5/Jaspar

Match Rank:8
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TCATTGTTCAAG
--ATTGTTA---

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:9
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TCATTGTTCAAG
YCTTTGTTCC--

MF0011.1_HMG_class/Jaspar

Match Rank:10
Score:0.69
Offset:2
Orientation:forward strand
Alignment:TCATTGTTCAAG
--ATTGTT----