Information for 18-TCCCAGACGGGG (Motif 30)


Reverse Opposite:

p-value:1e-4
log p-value:-1.050e+01
Information Content per bp:1.879
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif19.7
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets209.4 +/- 134.3bp
Average Position of motif in Background310.5 +/- 155.2bp
Strand Bias (log2 ratio + to - strand density)3.5
Multiplicity (# of sites on avg that occur together)2.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:TCCCAGACGGGG
--CCAGACAG--

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:TCCCAGACGGGG
--CCAGACRSVB

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:3
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-TCCCAGACGGGG
ATGCCAGACN---

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.60
Offset:-3
Orientation:forward strand
Alignment:---TCCCAGACGGGG--
CAAATCCAGACATCACA

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.59
Offset:1
Orientation:forward strand
Alignment:TCCCAGACGGGG-
-CACAGCAGGGGG

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---TCCCAGACGGGG
HTTTCCCASG-----

MA0144.2_STAT3/Jaspar

Match Rank:7
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--TCCCAGACGGGG
TTTCCCAGAAN---

MA0519.1_Stat5a::Stat5b/Jaspar

Match Rank:8
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---TCCCAGACGGGG
ATTTCCAAGAA----

MA0461.1_Atoh1/Jaspar

Match Rank:9
Score:0.55
Offset:3
Orientation:forward strand
Alignment:TCCCAGACGGGG
---CAGATGGC-

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--TCCCAGACGGGG-
CCACACAGCAGGAGA