Information for 19-KKATWAGT (Motif 31)


Reverse Opposite:

p-value:1e-4
log p-value:-9.464e+00
Information Content per bp:1.701
Number of Target Sequences with motif2156.0
Percentage of Target Sequences with motif47.89%
Number of Background Sequences with motif20531.4
Percentage of Background Sequences with motif45.07%
Average Position of motif in Targets278.0 +/- 158.1bp
Average Position of motif in Background277.5 +/- 159.0bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.42
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0132.1_Pdx1/Jaspar

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:KKATWAGT
-AATTAG-

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:2
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-KKATWAGT
RGGATTAR-

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:3
Score:0.72
Offset:0
Orientation:forward strand
Alignment:KKATWAGT
TAATTAGN

PH0039.1_Mnx1/Jaspar

Match Rank:4
Score:0.71
Offset:-4
Orientation:forward strand
Alignment:----KKATWAGT----
GTACTAATTAGTGGCG

PH0028.1_En1/Jaspar

Match Rank:5
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----KKATWAGT----
GNATTAATTAGTTNNC

PH0031.1_Evx1/Jaspar

Match Rank:6
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------KKATWAGT---
NNNCACTAATTAGTNNT

PH0175.1_Vax2/Jaspar

Match Rank:7
Score:0.71
Offset:-4
Orientation:reverse strand
Alignment:----KKATWAGT----
GNCTTAATTAGTGNNN

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:8
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:KKATWAGT
GGATTAGC

PH0092.1_Lhx2/Jaspar

Match Rank:9
Score:0.71
Offset:-6
Orientation:reverse strand
Alignment:------KKATWAGT---
NNNNNCTAATTAGTTTA

PH0027.1_Emx2/Jaspar

Match Rank:10
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----KKATWAGT----
ACCACTAATTAGTGGAC