Information for 21-CGCCGCGGCTTT (Motif 34)


Reverse Opposite:

p-value:1e-3
log p-value:-8.809e+00
Information Content per bp:1.905
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif0.07%
Number of Background Sequences with motif1.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets344.5 +/- 149.4bp
Average Position of motif in Background366.9 +/- 112.0bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)3.67
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0146.2_Zfx/Jaspar

Match Rank:1
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CGCCGCGGCTTT
GGGGCCGAGGCCTG

PB0180.1_Sp4_2/Jaspar

Match Rank:2
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CGCCGCGGCTTT-
NNGGCCACGCCTTTN

PB0010.1_Egr1_1/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CGCCGCGGCTTT
TCCGCCCCCGCATT

PB0151.1_Myf6_2/Jaspar

Match Rank:4
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CGCCGCGGCTTT----
-GGNGCGNCTGTTNNN

MA0048.1_NHLH1/Jaspar

Match Rank:5
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-CGCCGCGGCTTT
GCGCAGCTGCGT-

PB0008.1_E2F2_1/Jaspar

Match Rank:6
Score:0.52
Offset:-1
Orientation:reverse strand
Alignment:-CGCCGCGGCTTT--
NTCGCGCGCCTTNNN

PB0009.1_E2F3_1/Jaspar

Match Rank:7
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CGCCGCGGCTTT--
ANCGCGCGCCCTTNN

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:CGCCGCGGCTTT
------NGCTN-

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.50
Offset:-1
Orientation:reverse strand
Alignment:-CGCCGCGGCTTT-
ATGCCCGGGCATGT

POL006.1_BREu/Jaspar

Match Rank:10
Score:0.49
Offset:-4
Orientation:forward strand
Alignment:----CGCCGCGGCTTT
AGCGCGCC--------