Information for 6-AATGGAATCATC (Motif 4)


Reverse Opposite:

p-value:1e-16
log p-value:-3.726e+01
Information Content per bp:1.642
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif0.62%
Number of Background Sequences with motif34.5
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets272.5 +/- 168.0bp
Average Position of motif in Background299.4 +/- 159.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.93
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0468.1_DUX4/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AATGGAATCATC
TAATTTAATCA--

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AATGGAATCATC
NCTGGAATGC--

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:3
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AATGGAATCATC
AATGGAAAAT--

MA0081.1_SPIB/Jaspar

Match Rank:4
Score:0.58
Offset:0
Orientation:forward strand
Alignment:AATGGAATCATC
AGAGGAA-----

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-AATGGAATCATC
AGATGCAATCCC-

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--AATGGAATCATC
YTAATYNRATTA--

TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:AATGGAATCATC
CCWGGAATGY--

MA0101.1_REL/Jaspar

Match Rank:8
Score:0.55
Offset:3
Orientation:reverse strand
Alignment:AATGGAATCATC-
---GGAAANCCCC

PH0138.1_Pitx2/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AATGGAATCATC---
TGAAGGGATTAATCATC

PH0022.1_Dlx3/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-AATGGAATCATC----
NNNGGTAATTATNGNGN