Information for 3-GCAAGATCCG (Motif 5)


Reverse Opposite:

p-value:1e-15
log p-value:-3.591e+01
Information Content per bp:1.854
Number of Target Sequences with motif161.0
Percentage of Target Sequences with motif3.58%
Number of Background Sequences with motif802.4
Percentage of Background Sequences with motif1.76%
Average Position of motif in Targets262.4 +/- 154.8bp
Average Position of motif in Background272.7 +/- 151.4bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.65
Offset:4
Orientation:forward strand
Alignment:GCAAGATCCG
----GCTCCG

MA0164.1_Nr2e3/Jaspar

Match Rank:2
Score:0.59
Offset:1
Orientation:forward strand
Alignment:GCAAGATCCG
-CAAGCTT--

MA0131.1_HINFP/Jaspar

Match Rank:3
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCAAGATCCG-
-TAACGTCCGC

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GCAAGATCCG
AAGGCAAGTGT--

MA0141.2_Esrrb/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GCAAGATCCG
AGCTCAAGGTCA-

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-GCAAGATCCG
BTCAAGGTCA-

PB0014.1_Esrra_1/Jaspar

Match Rank:7
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---GCAAGATCCG----
TATTCAAGGTCATGCGA

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:8
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-GCAAGATCCG
NTCAAGGTCA-

MA0592.1_ESRRA/Jaspar

Match Rank:9
Score:0.55
Offset:0
Orientation:forward strand
Alignment:GCAAGATCCG-
CCAAGGTCACA

MA0101.1_REL/Jaspar

Match Rank:10
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GCAAGATCCG
GGAAANCCCC