Information for 6-GTTCACGCCA (Motif 7)


Reverse Opposite:

p-value:1e-12
log p-value:-2.849e+01
Information Content per bp:1.917
Number of Target Sequences with motif142.0
Percentage of Target Sequences with motif3.15%
Number of Background Sequences with motif741.5
Percentage of Background Sequences with motif1.63%
Average Position of motif in Targets277.9 +/- 158.6bp
Average Position of motif in Background272.1 +/- 157.0bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-GTTCACGCCA-
CNGTCACGCCAC

E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer

Match Rank:2
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GTTCACGCCA-
-TTCCCGCCWG

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:3
Score:0.75
Offset:1
Orientation:forward strand
Alignment:GTTCACGCCA-
-ATCACCCCAT

E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer

Match Rank:4
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--GTTCACGCCA
VDTTTCCCGCCA

MA0596.1_SREBF2/Jaspar

Match Rank:5
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GTTCACGCCA-
-ATCACCCCAT

MA0595.1_SREBF1/Jaspar

Match Rank:6
Score:0.71
Offset:1
Orientation:forward strand
Alignment:GTTCACGCCA-
-ATCACCCCAC

E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GTTCACGCCA
NYTTCCCGCC-

MA0470.1_E2F4/Jaspar

Match Rank:8
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-GTTCACGCCA
NNTTCCCGCCC

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:9
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GTTCACGCCA
DTTTCCCGCC-

MA0024.2_E2F1/Jaspar

Match Rank:10
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:GTTCACGCCA-
CCTCCCGCCCN