Information for 6-GGCTGTATAG (Motif 15)


Reverse Opposite:

p-value:1e-29
log p-value:-6.700e+01
Information Content per bp:1.986
Number of Target Sequences with motif34.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif3.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets232.1 +/- 128.5bp
Average Position of motif in Background112.9 +/- 55.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0158.1_Rhox11_2/Jaspar

Match Rank:1
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----GGCTGTATAG---
AGGACGCTGTAAAGGGA

PH0157.1_Rhox11_1/Jaspar

Match Rank:2
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----GGCTGTATAG---
AAGACGCTGTAAAGCGA

POL009.1_DCE_S_II/Jaspar

Match Rank:3
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GGCTGTATAG
-GCTGTG---

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GGCTGTATAG
NGCTN-----

POL012.1_TATA-Box/Jaspar

Match Rank:5
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GGCTGTATAG
NNNNNNCTTTTATAN

MA0108.2_TBP/Jaspar

Match Rank:6
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----GGCTGTATAG
NNNNNNCTTTTATAN

MA0032.1_FOXC1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-GGCTGTATAG
GGTAAGTA---

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--GGCTGTATAG
TWGTCTGV----

Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer

Match Rank:9
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GGCTGTATAG
--CTGTTTAC

PB0163.1_Six6_2/Jaspar

Match Rank:10
Score:0.53
Offset:-4
Orientation:reverse strand
Alignment:----GGCTGTATAG---
ANNNGGATATATCCNNN