Information for 3-TGGATATTTSGT (Motif 2)


Reverse Opposite:

p-value:1e-53
log p-value:-1.226e+02
Information Content per bp:1.871
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif0.16%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets223.8 +/- 130.5bp
Average Position of motif in Background309.9 +/- 75.6bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.30
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-TGGATATTTSGT
AAGGATATNTN--

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TGGATATTTSGT
ATGMATATDC---

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TGGATATTTSGT
AATGGAAAAT----

MA0130.1_ZNF354C/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-TGGATATTTSGT
GTGGAT-------

PB0163.1_Six6_2/Jaspar

Match Rank:5
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---TGGATATTTSGT--
ANNNGGATATATCCNNN

PB0002.1_Arid5a_1/Jaspar

Match Rank:6
Score:0.55
Offset:-4
Orientation:reverse strand
Alignment:----TGGATATTTSGT
NNTNNCAATATTAG--

MA0042.1_FOXI1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:TGGATATTTSGT-
-GGATGTTTGTTT

PH0107.1_Msx2/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-TGGATATTTSGT----
ANCGCTAATTGGTCTNN

MA0152.1_NFATC2/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:TGGATATTTSGT
TGGAAAA-----

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-TGGATATTTSGT
ATGCATAATTCA-