Information for 4-CGTGCCCC (Motif 20)


Reverse Opposite:

p-value:1e-21
log p-value:-4.867e+01
Information Content per bp:1.929
Number of Target Sequences with motif6458.0
Percentage of Target Sequences with motif23.75%
Number of Background Sequences with motif5810.1
Percentage of Background Sequences with motif21.34%
Average Position of motif in Targets214.0 +/- 120.7bp
Average Position of motif in Background213.3 +/- 120.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0133.1_Hic1_2/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---CGTGCCCC-----
GGGTGTGCCCAAAAGG

HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer

Match Rank:2
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---CGTGCCCC
RTACGTGC---

HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer

Match Rank:3
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--CGTGCCCC
TACGTGCV--

MA0259.1_HIF1A::ARNT/Jaspar

Match Rank:4
Score:0.70
Offset:-3
Orientation:forward strand
Alignment:---CGTGCCCC
GGACGTGC---

HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer

Match Rank:5
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----CGTGCCCC
GGGTACGTGC---

PB0153.1_Nr2f2_2/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CGTGCCCC------
NNNNTGACCCGGCGCG

PB0147.1_Max_2/Jaspar

Match Rank:7
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------CGTGCCCC
NNGTCGCGTGNCAC

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:8
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CGTGCCCC
NNACTTGCCTT

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer

Match Rank:9
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CGTGCCCC
TTGCGTGCVA-

MA0464.1_Bhlhe40/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CGTGCCCC
CTCACGTGCAC-