Information for 21-GAGCATCTGACA (Motif 29)


Reverse Opposite:

p-value:1e-12
log p-value:-2.809e+01
Information Content per bp:1.956
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif0.07%
Number of Background Sequences with motif2.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets221.9 +/- 128.4bp
Average Position of motif in Background272.0 +/- 78.7bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)2.63
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:1
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---GAGCATCTGACA--
CCNNACCATCTGGCCTN

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:GAGCATCTGACA
-ANCAGCTG---

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAGCATCTGACA-
-NVCAGCTGBBNN

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:GAGCATCTGACA-
-GCCAGCTGBTNB

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:5
Score:0.61
Offset:4
Orientation:forward strand
Alignment:GAGCATCTGACA--
----VGCTGWCAVB

MA0091.1_TAL1::TCF3/Jaspar

Match Rank:6
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GAGCATCTGACA
CGACCATCTGTT-

PB0003.1_Ascl2_1/Jaspar

Match Rank:7
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GAGCATCTGACA--
NNNNAGCAGCTGCTGAN

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GAGCATCTGACA
-RTCATGTGAC-

MA0100.2_Myb/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GAGCATCTGACA
--CCAACTGCCA

PB0149.1_Myb_2/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GAGCATCTGACA---
CGACCAACTGCCATGC