Information for 4-ATGCACACATCA (Motif 3)


Reverse Opposite:

p-value:1e-41
log p-value:-9.478e+01
Information Content per bp:1.923
Number of Target Sequences with motif109.0
Percentage of Target Sequences with motif0.40%
Number of Background Sequences with motif21.3
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets206.8 +/- 120.2bp
Average Position of motif in Background217.7 +/- 123.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.31
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--ATGCACACATCA--
CGAAGCACACAAAATA

PH0134.1_Pbx1/Jaspar

Match Rank:2
Score:0.67
Offset:2
Orientation:forward strand
Alignment:ATGCACACATCA-------
--TCACCCATCAATAAACA

PB0044.1_Mtf1_1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---ATGCACACATCA-
NNTTTGCACACGGCCC

PB0104.1_Zscan4_1/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----ATGCACACATCA
TACATGTGCACATAAAA

PB0130.1_Gm397_2/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ATGCACACATCA--
AGCGGCACACACGCAA

PB0026.1_Gm397_1/Jaspar

Match Rank:6
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----ATGCACACATCA-
NNGTATGTGCACATNNN

Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer

Match Rank:7
Score:0.59
Offset:-6
Orientation:forward strand
Alignment:------ATGCACACATCA
NNNVCTGWGYAAACASN-

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.59
Offset:0
Orientation:forward strand
Alignment:ATGCACACATCA
ATGCATAATTCA

PH0148.1_Pou3f3/Jaspar

Match Rank:9
Score:0.57
Offset:-6
Orientation:reverse strand
Alignment:------ATGCACACATCA
TNNATTATGCATANNTT-

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:10
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:ATGCACACATCA
------ACGTCA