Information for 19-CATCCATC (Motif 34)


Reverse Opposite:

p-value:1e-9
log p-value:-2.277e+01
Information Content per bp:1.808
Number of Target Sequences with motif6703.0
Percentage of Target Sequences with motif24.65%
Number of Background Sequences with motif6266.8
Percentage of Background Sequences with motif23.02%
Average Position of motif in Targets214.3 +/- 121.2bp
Average Position of motif in Background213.4 +/- 128.9bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.39
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer

Match Rank:1
Score:0.85
Offset:-2
Orientation:forward strand
Alignment:--CATCCATC--
GYCATCMATCAT

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:2
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-CATCCATC-
TCATCAATCA

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:3
Score:0.72
Offset:-3
Orientation:reverse strand
Alignment:---CATCCATC-
RGCCATYAATCA

MA0070.1_PBX1/Jaspar

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-CATCCATC---
CCATCAATCAAA

PH0134.1_Pbx1/Jaspar

Match Rank:5
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-CATCCATC--------
TCACCCATCAATAAACA

MA0594.1_Hoxa9/Jaspar

Match Rank:6
Score:0.68
Offset:-2
Orientation:forward strand
Alignment:--CATCCATC-
GCCATAAATCA

PB0170.1_Sox17_2/Jaspar

Match Rank:7
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----CATCCATC----
GACCACATTCATACAAT

PB0178.1_Sox8_2/Jaspar

Match Rank:8
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CATCCATC-----
ACATTCATGACACG

PB0144.1_Lef1_2/Jaspar

Match Rank:9
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---CATCCATC-----
GAAGATCAATCACTTA

MA0090.1_TEAD1/Jaspar

Match Rank:10
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CATCCATC--
CACATTCCTCCG