Information for 20-CGGAGCTT (Motif 35)


Reverse Opposite:

p-value:1e-9
log p-value:-2.261e+01
Information Content per bp:1.965
Number of Target Sequences with motif530.0
Percentage of Target Sequences with motif1.95%
Number of Background Sequences with motif399.3
Percentage of Background Sequences with motif1.47%
Average Position of motif in Targets216.1 +/- 115.2bp
Average Position of motif in Background209.7 +/- 110.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:CGGAGCTT
CGGAGC--

MA0164.1_Nr2e3/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CGGAGCTT-
--AAGCTTG

MA0131.1_HINFP/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CGGAGCTT-
GCGGACGTTN

POL010.1_DCE_S_III/Jaspar

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:CGGAGCTT
--CAGCC-

MA0483.1_Gfi1b/Jaspar

Match Rank:5
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CGGAGCTT-
TGCTGTGATTT

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:6
Score:0.57
Offset:-1
Orientation:reverse strand
Alignment:-CGGAGCTT-
GCAGTGATTT

MA0048.1_NHLH1/Jaspar

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CGGAGCTT---
GCGCAGCTGCGT

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CGGAGCTT
RCCGGAARYN

Sp1(Zf)/Promoter/Homer

Match Rank:9
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----CGGAGCTT
GGGGGCGGGGCC-

POL008.1_DCE_S_I/Jaspar

Match Rank:10
Score:0.56
Offset:4
Orientation:forward strand
Alignment:CGGAGCTT--
----GCTTCC