Information for 5-CACCATAGGCCT (Motif 4)


Reverse Opposite:

p-value:1e-41
log p-value:-9.459e+01
Information Content per bp:1.838
Number of Target Sequences with motif59.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif5.1
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets220.0 +/- 123.8bp
Average Position of motif in Background129.5 +/- 64.3bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:1
Score:0.65
Offset:6
Orientation:forward strand
Alignment:CACCATAGGCCT--
------AGGCCTNG

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:2
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:CACCATAGGCCT
----CTAGGCCT

PB0189.1_Tcfap2a_2/Jaspar

Match Rank:3
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CACCATAGGCCT-
TCACCTCTGGGCAG

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:4
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:CACCATAGGCCT
-AACAKATGGY-

MA0109.1_Hltf/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CACCATAGGCCT
AACCTTATAT--

MA0146.2_Zfx/Jaspar

Match Rank:6
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:CACCATAGGCCT-------
-----CAGGCCNNGGCCNN

MA0033.1_FOXL1/Jaspar

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CACCATAGGCCT
TATACATA-----

MA0143.3_Sox2/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:CACCATAGGCCT
-AACAAAGG---

PB0143.1_Klf7_2/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CACCATAGGCCT-----
AAGCATACGCCCAACTT

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CACCATAGGCCT
AAACCACAGC---