Information for 6-GTCTAGTATTTA (Motif 5)


Reverse Opposite:

p-value:1e-40
log p-value:-9.348e+01
Information Content per bp:1.824
Number of Target Sequences with motif54.0
Percentage of Target Sequences with motif0.20%
Number of Background Sequences with motif4.9
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets226.2 +/- 131.4bp
Average Position of motif in Background252.9 +/- 128.9bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.15
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0060.1_Smad3_1/Jaspar

Match Rank:1
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------GTCTAGTATTTA
NNTNNTGTCTGGNNTNG-

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:2
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GTCTAGTATTTA
GGTCTGGCAT---

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--GTCTAGTATTTA
CTGTCTGG------

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:4
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GTCTAGTATTTA
VBSYGTCTGG------

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GTCTAGTATTTA
TWGTCTGV------

PB0106.1_Arid5a_2/Jaspar

Match Rank:6
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GTCTAGTATTTA---
TNNTTTCGTATTNNANN

PB0181.1_Spdef_2/Jaspar

Match Rank:7
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-GTCTAGTATTTA---
CTACTAGGATGTNNTN

PH0062.1_Hoxb7/Jaspar

Match Rank:8
Score:0.55
Offset:2
Orientation:forward strand
Alignment:GTCTAGTATTTA------
--GTAGTAATTAATGCAA

MA0153.1_HNF1B/Jaspar

Match Rank:9
Score:0.54
Offset:2
Orientation:forward strand
Alignment:GTCTAGTATTTA--
--TTAATATTTAAC

PH0054.1_Hoxa7_1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:GTCTAGTATTTA-----
GNNNATTAATTAANNCG