| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | Sp1(Zf)/Promoter/Homer | 1e-10 | -2.448e+01 | 0.0000 | 690.0 | 2.54% | 533.8 | 1.96% | motif file (matrix) |
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| 2 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-8 | -2.013e+01 | 0.0000 | 4368.0 | 16.06% | 4023.0 | 14.78% | motif file (matrix) |
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| 3 |  | Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer | 1e-8 | -2.011e+01 | 0.0000 | 880.0 | 3.24% | 719.6 | 2.64% | motif file (matrix) |
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| 4 |  | Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer | 1e-4 | -9.787e+00 | 0.0037 | 5188.0 | 19.08% | 4945.4 | 18.17% | motif file (matrix) |
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| 5 |  | Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer | 1e-3 | -8.815e+00 | 0.0078 | 1712.0 | 6.30% | 1572.6 | 5.78% | motif file (matrix) |
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| 6 |  | Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer | 1e-3 | -7.172e+00 | 0.0338 | 1308.0 | 4.81% | 1200.9 | 4.41% | motif file (matrix) |
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| 7 |  | GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-3 | -6.953e+00 | 0.0360 | 634.0 | 2.33% | 561.0 | 2.06% | motif file (matrix) |
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| 8 |  | Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer | 1e-2 | -6.737e+00 | 0.0392 | 4853.0 | 17.85% | 4667.8 | 17.15% | motif file (matrix) |
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| 9 |  | PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-2 | -6.361e+00 | 0.0507 | 7271.0 | 26.74% | 7065.7 | 25.96% | motif file (matrix) |
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| 10 |  | Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer | 1e-2 | -5.531e+00 | 0.1046 | 15688.0 | 57.69% | 15485.7 | 56.89% | motif file (matrix) |
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| 11 |  | Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer | 1e-2 | -5.268e+00 | 0.1237 | 1836.0 | 6.75% | 1733.1 | 6.37% | motif file (matrix) |
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| 12 |  | Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer | 1e-2 | -4.877e+00 | 0.1677 | 6355.0 | 23.37% | 6192.5 | 22.75% | motif file (matrix) |
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