Information for 7-TGAACAATAA (Motif 10)


Reverse Opposite:

p-value:1e-16
log p-value:-3.709e+01
Information Content per bp:1.823
Number of Target Sequences with motif138.0
Percentage of Target Sequences with motif4.30%
Number of Background Sequences with motif914.8
Percentage of Background Sequences with motif1.96%
Average Position of motif in Targets283.6 +/- 147.1bp
Average Position of motif in Background275.6 +/- 168.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0072.1_Sox5_1/Jaspar

Match Rank:1
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---TGAACAATAA---
TTTAGAACAATAAAAT

PB0065.1_Sox15_1/Jaspar

Match Rank:2
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---TGAACAATAA----
TAGTGAACAATAGATTT

PB0062.1_Sox12_1/Jaspar

Match Rank:3
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----TGAACAATAA
NTTNAGAACAATTA

PB0070.1_Sox30_1/Jaspar

Match Rank:4
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--TGAACAATAA----
AATGAACAATGGAATT

PB0183.1_Sry_2/Jaspar

Match Rank:5
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----TGAACAATAA---
TCACGGAACAATAGGTG

PB0063.1_Sox13_1/Jaspar

Match Rank:6
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---TGAACAATAA---
TTAAGAACAATAAATT

MF0011.1_HMG_class/Jaspar

Match Rank:7
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:TGAACAATAA
--AACAAT--

PB0073.1_Sox7_1/Jaspar

Match Rank:8
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----TGAACAATAA-------
AATAAAGAACAATAGAATTTCA

PB0074.1_Sox8_1/Jaspar

Match Rank:9
Score:0.71
Offset:-3
Orientation:reverse strand
Alignment:---TGAACAATAA----
TNNAGAACAATANATNN

MA0087.1_Sox5/Jaspar

Match Rank:10
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:TGAACAATAA
-NAACAAT--