Information for 4-ASCTAATG (Motif 16)


Reverse Opposite:

p-value:1e-8
log p-value:-1.972e+01
Information Content per bp:1.680
Number of Target Sequences with motif570.0
Percentage of Target Sequences with motif17.75%
Number of Background Sequences with motif6558.7
Percentage of Background Sequences with motif14.04%
Average Position of motif in Targets281.2 +/- 157.2bp
Average Position of motif in Background276.7 +/- 159.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0132.1_Pdx1/Jaspar

Match Rank:1
Score:0.72
Offset:2
Orientation:forward strand
Alignment:ASCTAATG
--CTAATT

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.69
Offset:2
Orientation:forward strand
Alignment:ASCTAATG--
--CTAATKGV

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:3
Score:0.67
Offset:1
Orientation:forward strand
Alignment:ASCTAATG-
-GKTAATGR

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:ASCTAATG---
-GTTAATGGCC

PH0058.1_Hoxb3/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--ASCTAATG-------
TGAGCTAATTAGTTGGA

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:6
Score:0.59
Offset:1
Orientation:forward strand
Alignment:ASCTAATG-
-GCTAATCC

PB0135.1_Hoxa3_2/Jaspar

Match Rank:7
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ASCTAATG------
CCTTAATNGNTTTT

PH0151.1_Pou6f1_1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--ASCTAATG-------
GACGATAATGAGCTTGC

Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:ASCTAATG-
-NCTAATTA

PH0074.1_Hoxd1/Jaspar

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---ASCTAATG------
NNNAGCTAATTAGCTTA