Information for 5-GTCTCGAT (Motif 17)


Reverse Opposite:

p-value:1e-8
log p-value:-1.850e+01
Information Content per bp:1.941
Number of Target Sequences with motif120.0
Percentage of Target Sequences with motif3.74%
Number of Background Sequences with motif1000.1
Percentage of Background Sequences with motif2.14%
Average Position of motif in Targets288.7 +/- 160.5bp
Average Position of motif in Background278.1 +/- 159.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0035.1_Irf5_1/Jaspar

Match Rank:1
Score:0.76
Offset:-3
Orientation:reverse strand
Alignment:---GTCTCGAT----
NTGGTTTCGGTTNNN

PB0036.1_Irf6_1/Jaspar

Match Rank:2
Score:0.76
Offset:-6
Orientation:reverse strand
Alignment:------GTCTCGAT---
NNNTTGGTTTCGNTNNN

PB0139.1_Irf5_2/Jaspar

Match Rank:3
Score:0.75
Offset:-4
Orientation:reverse strand
Alignment:----GTCTCGAT---
NNAATTCTCGNTNAN

PB0034.1_Irf4_1/Jaspar

Match Rank:4
Score:0.74
Offset:-4
Orientation:reverse strand
Alignment:----GTCTCGAT---
TNTGGTTTCGATACN

PB0037.1_Isgf3g_1/Jaspar

Match Rank:5
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---GTCTCGAT----
TNAGTTTCGATTTTN

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GTCTCGAT--
NTATYGATCH

PB0060.1_Smad3_1/Jaspar

Match Rank:7
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------GTCTCGAT---
NNTNNTGTCTGGNNTNG

PB0138.1_Irf4_2/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GTCTCGAT---
AGTATTCTCGGTTGC

PB0140.1_Irf6_2/Jaspar

Match Rank:9
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----GTCTCGAT---
ACCACTCTCGGTCAC

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GTCTCGAT
CTGTCTGG--