Information for 6-TTTGTTAC (Motif 19)


Reverse Opposite:

p-value:1e-7
log p-value:-1.625e+01
Information Content per bp:1.530
Number of Target Sequences with motif169.0
Percentage of Target Sequences with motif5.26%
Number of Background Sequences with motif1609.1
Percentage of Background Sequences with motif3.45%
Average Position of motif in Targets282.4 +/- 153.0bp
Average Position of motif in Background273.0 +/- 161.8bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0119.1_Foxa2_2/Jaspar

Match Rank:1
Score:0.78
Offset:-3
Orientation:reverse strand
Alignment:---TTTGTTAC----
NCNTTTGTTATTTNN

MF0011.1_HMG_class/Jaspar

Match Rank:2
Score:0.75
Offset:0
Orientation:forward strand
Alignment:TTTGTTAC
ATTGTT--

PB0071.1_Sox4_1/Jaspar

Match Rank:3
Score:0.75
Offset:-6
Orientation:reverse strand
Alignment:------TTTGTTAC---
TNNTCCTTTGTTCTNNT

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--TTTGTTAC
CCATTGTTNY

PB0061.1_Sox11_1/Jaspar

Match Rank:5
Score:0.72
Offset:-6
Orientation:reverse strand
Alignment:------TTTGTTAC---
NNNTCCTTTGTTCTNNN

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:6
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--TTTGTTAC
YCTTTGTTCC

MA0084.1_SRY/Jaspar

Match Rank:7
Score:0.71
Offset:0
Orientation:reverse strand
Alignment:TTTGTTAC-
ATTGTTTAN

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:8
Score:0.70
Offset:-2
Orientation:reverse strand
Alignment:--TTTGTTAC
NTTTTATGAC

MA0514.1_Sox3/Jaspar

Match Rank:9
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TTTGTTAC
CCTTTGTTTT

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:10
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--TTTGTTAC
CCWTTGTYYB