Information for 5-TCAATGATTCCA (Motif 2)


Reverse Opposite:

p-value:1e-27
log p-value:-6.258e+01
Information Content per bp:1.979
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets341.1 +/- 150.8bp
Average Position of motif in Background264.7 +/- 133.4bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-TCAATGATTCCA----
TNNNATGATTTCNNCNN

MF0010.1_Homeobox_class/Jaspar

Match Rank:2
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TCAATGATTCCA
--AATAATT---

NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:3
Score:0.65
Offset:-5
Orientation:reverse strand
Alignment:-----TCAATGATTCCA---
NTGACTCANTTTTTCCANTN

PB0197.1_Zfp105_2/Jaspar

Match Rank:4
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----TCAATGATTCCA
ATGGTTCAATAATTTTG

PB0028.1_Hbp1_1/Jaspar

Match Rank:5
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----TCAATGATTCCA
ACTATGAATGAATGAT

MA0038.1_Gfi1/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:TCAATGATTCCA
-CNGTGATTTN-

TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TCAATGATTCCA--
----GCATTCCAGN

Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:8
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TCAATGATTCCA
TAATTGATTA--

PB0144.1_Lef1_2/Jaspar

Match Rank:9
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----TCAATGATTCCA
GAAGATCAATCACTTA-

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:10
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----TCAATGATTCCA
GAAGATCAATCACTAA-