Information for 22-CCCCGTCTGGGA (Motif 20)


Reverse Opposite:

p-value:1e-6
log p-value:-1.461e+01
Information Content per bp:1.906
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.31%
Number of Background Sequences with motif17.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets293.5 +/- 143.0bp
Average Position of motif in Background300.0 +/- 138.0bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)3.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CCCCGTCTGGGA
--CTGTCTGG--

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.70
Offset:0
Orientation:forward strand
Alignment:CCCCGTCTGGGA
VBSYGTCTGG--

MA0092.1_Hand1::Tcfe2a/Jaspar

Match Rank:3
Score:0.65
Offset:3
Orientation:forward strand
Alignment:CCCCGTCTGGGA-
---GGTCTGGCAT

PB0060.1_Smad3_1/Jaspar

Match Rank:4
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--CCCCGTCTGGGA---
NNTNNTGTCTGGNNTNG

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-CCCCGTCTGGGA
CCCCCTGCTGTG-

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:6
Score:0.59
Offset:5
Orientation:reverse strand
Alignment:CCCCGTCTGGGA---
-----CSTGGGAAAD

MA0144.2_STAT3/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:forward strand
Alignment:CCCCGTCTGGGA--
---CTTCTGGGAAA

MA0461.1_Atoh1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:reverse strand
Alignment:CCCCGTCTGGGA
-GCCATCTG---

MA0519.1_Stat5a::Stat5b/Jaspar

Match Rank:9
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:CCCCGTCTGGGA---
----TTCTTGGAAAN

PB0206.1_Zic2_2/Jaspar

Match Rank:10
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-CCCCGTCTGGGA--
TCNCCTGCTGNGNNN