Information for 8-GWGGGCTAGCAT (Motif 3)


Reverse Opposite:

p-value:1e-21
log p-value:-4.875e+01
Information Content per bp:1.739
Number of Target Sequences with motif86.0
Percentage of Target Sequences with motif2.68%
Number of Background Sequences with motif363.4
Percentage of Background Sequences with motif0.78%
Average Position of motif in Targets281.9 +/- 136.6bp
Average Position of motif in Background271.9 +/- 168.7bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0029.1_Hic1_1/Jaspar

Match Rank:1
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-GWGGGCTAGCAT---
NGTAGGTTGGCATNNN

PB0059.1_Six6_1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GWGGGCTAGCAT----
AATAGGGTATCATATAT

MA0019.1_Ddit3::Cebpa/Jaspar

Match Rank:3
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:GWGGGCTAGCAT--
--GGGATTGCATNN

PH0161.1_Six1/Jaspar

Match Rank:4
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-GWGGGCTAGCAT----
GATGGGGTATCATTTTT

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:5
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:GWGGGCTAGCAT
--GGATTAGC--

PB0156.1_Plagl1_2/Jaspar

Match Rank:6
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---GWGGGCTAGCAT--
GCTGGGGGGTACCCCTT

PB0098.1_Zfp410_1/Jaspar

Match Rank:7
Score:0.57
Offset:-4
Orientation:forward strand
Alignment:----GWGGGCTAGCAT-
TATTATGGGATGGATAA

PH0162.1_Six2/Jaspar

Match Rank:8
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GWGGGCTAGCAT----
AATGGGGTATCACGTTT

ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GWGGGCTAGCAT
-AGGCCTNG---

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:GWGGGCTAGCAT
-AGGCCTAG---