Information for 9-ATTAATGAGGTA (Motif 4)


Reverse Opposite:

p-value:1e-20
log p-value:-4.812e+01
Information Content per bp:1.980
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.50%
Number of Background Sequences with motif5.4
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets241.2 +/- 108.3bp
Average Position of motif in Background359.8 +/- 99.5bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0150.1_Pou4f3/Jaspar

Match Rank:1
Score:0.81
Offset:-4
Orientation:forward strand
Alignment:----ATTAATGAGGTA
AGTTATTAATGAGGTC

PH0151.1_Pou6f1_1/Jaspar

Match Rank:2
Score:0.78
Offset:-3
Orientation:forward strand
Alignment:---ATTAATGAGGTA--
GACGATAATGAGCTTGC

PH0152.1_Pou6f1_2/Jaspar

Match Rank:3
Score:0.76
Offset:-3
Orientation:forward strand
Alignment:---ATTAATGAGGTA--
AAACATAATGAGGTTGC

PH0143.1_Pou2f1/Jaspar

Match Rank:4
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----ATTAATGAGGTA
ATATATTAATTAAGTA

PH0019.1_Dbx2/Jaspar

Match Rank:5
Score:0.70
Offset:-4
Orientation:forward strand
Alignment:----ATTAATGAGGTA
TTTAATTAATTAATTC

PH0119.1_Nkx6-1_2/Jaspar

Match Rank:6
Score:0.68
Offset:-4
Orientation:forward strand
Alignment:----ATTAATGAGGTA
AGTAATTAATTACTTC

PH0146.1_Pou3f1/Jaspar

Match Rank:7
Score:0.67
Offset:-5
Orientation:forward strand
Alignment:-----ATTAATGAGGTA
AATTAATTAATTAATTC

PH0147.1_Pou3f2/Jaspar

Match Rank:8
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ATTAATGAGGTA-
GATAATTAATTAGTTTG

PH0120.1_Nkx6-3/Jaspar

Match Rank:9
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ATTAATGAGGTA-
GAAAATTAATTACTTTG

PH0080.1_Hoxd8/Jaspar

Match Rank:10
Score:0.66
Offset:-5
Orientation:reverse strand
Alignment:-----ATTAATGAGGTA
NAGCCATTAATTANTTA