Information for 12-GAGCATCCGACA (Motif 10)


Reverse Opposite:

p-value:1e-15
log p-value:-3.658e+01
Information Content per bp:1.855
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif0.12%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets215.9 +/- 130.4bp
Average Position of motif in Background219.1 +/- 186.9bp
Strand Bias (log2 ratio + to - strand density)2.8
Multiplicity (# of sites on avg that occur together)3.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0077.1_Spdef_1/Jaspar

Match Rank:1
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAGCATCCGACA----
GTACATCCGGATTTTT

NRF(NRF)/Promoter/Homer

Match Rank:2
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GAGCATCCGACA
GTGCGCATGCGC--

PB0181.1_Spdef_2/Jaspar

Match Rank:3
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--GAGCATCCGACA--
GATAACATCCTAGTAG

PB0193.1_Tcfe2a_2/Jaspar

Match Rank:4
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---GAGCATCCGACA--
CCNNACCATCTGGCCTN

PB0138.1_Irf4_2/Jaspar

Match Rank:5
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:GAGCATCCGACA-----
--GNNACCGAGAATNNN

Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer

Match Rank:6
Score:0.53
Offset:1
Orientation:forward strand
Alignment:GAGCATCCGACA
-NRYTTCCGGH-

NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer

Match Rank:7
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--GAGCATCCGACA
CTGCGCATGCGC--

Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.52
Offset:1
Orientation:forward strand
Alignment:GAGCATCCGACA
-NRYTTCCGGY-

MA0506.1_NRF1/Jaspar

Match Rank:9
Score:0.51
Offset:-1
Orientation:reverse strand
Alignment:-GAGCATCCGACA
TGCGCAGGCGC--

SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer

Match Rank:10
Score:0.51
Offset:2
Orientation:forward strand
Alignment:GAGCATCCGACA
--ACATCCTGNT