Information for 3-ACGGCAGG (Motif 12)


Reverse Opposite:

p-value:1e-13
log p-value:-3.157e+01
Information Content per bp:1.905
Number of Target Sequences with motif2043.0
Percentage of Target Sequences with motif15.43%
Number of Background Sequences with motif4828.3
Percentage of Background Sequences with motif13.15%
Average Position of motif in Targets222.8 +/- 123.6bp
Average Position of motif in Background219.0 +/- 126.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.74
Offset:-1
Orientation:forward strand
Alignment:-ACGGCAGG---
CACAGCAGGGGG

PB0205.1_Zic1_2/Jaspar

Match Rank:2
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----ACGGCAGG---
CCACACAGCAGGAGA

PB0207.1_Zic3_2/Jaspar

Match Rank:3
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----ACGGCAGG---
GAGCACAGCAGGACA

PB0206.1_Zic2_2/Jaspar

Match Rank:4
Score:0.66
Offset:-4
Orientation:forward strand
Alignment:----ACGGCAGG---
CCACACAGCAGGAGA

MF0002.1_bZIP_CREB/G-box-like_subclass/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:ACGGCAGG
ACGTCA--

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:ACGGCAGG----
--NNCAGGTGNN

POL009.1_DCE_S_II/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:ACGGCAGG
--CACAGN

PB0091.1_Zbtb3_1/Jaspar

Match Rank:8
Score:0.62
Offset:-6
Orientation:forward strand
Alignment:------ACGGCAGG---
AATCGCACTGCATTCCG

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---ACGGCAGG
NAAACCACAG-

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--ACGGCAGG
AAACCACAGC