Information for 6-CTCCRTCT (Motif 16)


Reverse Opposite:

p-value:1e-12
log p-value:-2.817e+01
Information Content per bp:1.718
Number of Target Sequences with motif2898.0
Percentage of Target Sequences with motif21.88%
Number of Background Sequences with motif7122.4
Percentage of Background Sequences with motif19.40%
Average Position of motif in Targets221.9 +/- 123.2bp
Average Position of motif in Background220.4 +/- 128.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.23
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CTCCRTCT---
-GCCATCTGTT

YY1(Zf)/Promoter/Homer

Match Rank:2
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CTCCRTCT--
GCCGCCATCTTG

MA0461.1_Atoh1/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTCCRTCT-
-GCCATCTG

MA0079.3_SP1/Jaspar

Match Rank:4
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-CTCCRTCT--
GCCCCGCCCCC

POL003.1_GC-box/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CTCCRTCT---
NAGCCCCGCCCCCN

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CTCCRTCT
GCTCCG---

MA0095.2_YY1/Jaspar

Match Rank:7
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTCCRTCT--
GCNGCCATCTTG

PB0107.1_Ascl2_2/Jaspar

Match Rank:8
Score:0.60
Offset:-4
Orientation:forward strand
Alignment:----CTCCRTCT----
CTATCCCCGCCCTATT

MA0516.1_SP2/Jaspar

Match Rank:9
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTCCRTCT------
GCCCCGCCCCCTCCC

MA0599.1_KLF5/Jaspar

Match Rank:10
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CTCCRTCT-
GCCCCGCCCC