Information for 21-GGCCAGCCGC (Motif 17)


Reverse Opposite:

p-value:1e-11
log p-value:-2.622e+01
Information Content per bp:1.530
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif0.15%
Number of Background Sequences with motif7.4
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets221.0 +/- 104.8bp
Average Position of motif in Background219.1 +/- 112.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)2.25
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0151.1_Myf6_2/Jaspar

Match Rank:1
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--GGCCAGCCGC---
AGCAACAGCCGCACC

MA0461.1_Atoh1/Jaspar

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:GGCCAGCCGC
-GCCATCTG-

MA0522.1_Tcf3/Jaspar

Match Rank:3
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GGCCAGCCGC--
-CACAGCTGCAG

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GGCCAGCCGC--
--NCAGCTGCTG

Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-GGCCAGCCGC-
NNVVCAGCTGBN

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:6
Score:0.60
Offset:1
Orientation:forward strand
Alignment:GGCCAGCCGC---
-AGCAGCTGCTNN

SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:GGCCAGCCGC-
---CAGCTGNT

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:forward strand
Alignment:GGCCAGCCGC
---CAGCC--

Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:GGCCAGCCGC---
-GCCAGCTGBTNB

E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer

Match Rank:10
Score:0.59
Offset:0
Orientation:forward strand
Alignment:GGCCAGCCGC
NNACAGCTGC