Information for 18-TCAGCTGAGGAT (Motif 20)


Reverse Opposite:

p-value:1e-9
log p-value:-2.231e+01
Information Content per bp:1.880
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif0.07%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets199.4 +/- 88.1bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer

Match Rank:1
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--TCAGCTGAGGAT
NAHCAGCTGD----

MA0048.1_NHLH1/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--TCAGCTGAGGAT
NCGCAGCTGCGN--

THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TCAGCTGAGGAT-
GGTCANYTGAGGWCA

MA0103.2_ZEB1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TCAGCTGAGGAT
-CAGGTGAGG--

MA0117.1_Mafb/Jaspar

Match Rank:5
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---TCAGCTGAGGAT
NCGTCAGC-------

MA0500.1_Myog/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-TCAGCTGAGGAT
GACAGCTGCAG--

MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TCAGCTGAGGAT
AACAGCTG-----

MA0522.1_Tcf3/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:reverse strand
Alignment:--TCAGCTGAGGAT
NTGCAGCTGTG---

PB0003.1_Ascl2_1/Jaspar

Match Rank:9
Score:0.59
Offset:-5
Orientation:reverse strand
Alignment:-----TCAGCTGAGGAT
NNNNAGCAGCTGCTGAN

MA0521.1_Tcf12/Jaspar

Match Rank:10
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-TCAGCTGAGGAT
AACAGCTGCAG--