Information for 12-CCTAATGC (Motif 23)


Reverse Opposite:

p-value:1e-8
log p-value:-1.876e+01
Information Content per bp:1.937
Number of Target Sequences with motif257.0
Percentage of Target Sequences with motif1.94%
Number of Background Sequences with motif490.9
Percentage of Background Sequences with motif1.34%
Average Position of motif in Targets207.8 +/- 109.8bp
Average Position of motif in Background213.4 +/- 132.2bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0132.1_Pdx1/Jaspar

Match Rank:1
Score:0.79
Offset:1
Orientation:forward strand
Alignment:CCTAATGC
-CTAATT-

GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CCTAATGC-
-YTAATCCY

CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CCTAATGC
GCTAATCC

Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CCTAATGC--
NYTAATCCYB

PB0185.1_Tcf1_2/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:CCTAATGC------
NNTAATCCNGNCNN

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:CCTAATGC-
-CTAATKGV

Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer

Match Rank:7
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CCTAATGC--
--TAATCCCN

PH0025.1_Dmbx1/Jaspar

Match Rank:8
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---CCTAATGC------
NNNATTAATCCGNTTNA

Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer

Match Rank:9
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CCTAATGC
GKTAATGR

MA0075.1_Prrx2/Jaspar

Match Rank:10
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CCTAATGC
--TAATT-