Information for 22-GAAGGAAGGA (Motif 24)


Reverse Opposite:

p-value:1e-7
log p-value:-1.701e+01
Information Content per bp:1.911
Number of Target Sequences with motif452.0
Percentage of Target Sequences with motif3.41%
Number of Background Sequences with motif966.8
Percentage of Background Sequences with motif2.63%
Average Position of motif in Targets218.7 +/- 117.3bp
Average Position of motif in Background221.8 +/- 125.6bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0149.1_EWSR1-FLI1/Jaspar

Match Rank:1
Score:0.75
Offset:-1
Orientation:forward strand
Alignment:-GAAGGAAGGA-------
GGAAGGAAGGAAGGAAGG

MA0598.1_EHF/Jaspar

Match Rank:2
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GAAGGAAGGA
-CAGGAAGG-

MA0136.1_ELF5/Jaspar

Match Rank:3
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GAAGGAAGGA
-AAGGAAGTA

MA0474.1_Erg/Jaspar

Match Rank:4
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GAAGGAAGGA-
ACAGGAAGTGG

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-GAAGGAAGGA
AVCAGGAAGT-

MA0475.1_FLI1/Jaspar

Match Rank:6
Score:0.63
Offset:0
Orientation:forward strand
Alignment:GAAGGAAGGA-
ACAGGAAGTGG

POL008.1_DCE_S_I/Jaspar

Match Rank:7
Score:0.61
Offset:3
Orientation:reverse strand
Alignment:GAAGGAAGGA
---NGAAGC-

ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer

Match Rank:8
Score:0.61
Offset:0
Orientation:forward strand
Alignment:GAAGGAAGGA
ACAGGAAGTG

MA0098.2_Ets1/Jaspar

Match Rank:9
Score:0.60
Offset:-3
Orientation:reverse strand
Alignment:---GAAGGAAGGA--
NNNACAGGAAGTGGN

PB0012.1_Elf3_1/Jaspar

Match Rank:10
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GAAGGAAGGA-
AACAAGGAAGTAA