Information for 24-CAGCACCCAATC (Motif 26)


Reverse Opposite:

p-value:1e-3
log p-value:-7.016e+00
Information Content per bp:1.980
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.04%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets193.2 +/- 112.1bp
Average Position of motif in Background176.3 +/- 150.9bp
Strand Bias (log2 ratio + to - strand density)3.2
Multiplicity (# of sites on avg that occur together)4.20
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0130.1_Gm397_2/Jaspar

Match Rank:1
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAGCACCCAATC--
AGCGGCACACACGCAA

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--CAGCACCCAATC--
CGAAGCACACAAAATA

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CAGCACCCAATC-
-ACTAGCCAATCA

PH0026.1_Duxbl/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:CAGCACCCAATC-------
--CGACCCAATCAACGGTG

MA0502.1_NFYB/Jaspar

Match Rank:5
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-CAGCACCCAATC--
AAATGGACCAATCAG

NFY(CCAAT)/Promoter/Homer

Match Rank:6
Score:0.60
Offset:4
Orientation:forward strand
Alignment:CAGCACCCAATC--
----AGCCAATCGG

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:7
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-CAGCACCCAATC
GCCACACCCA---

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:8
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:CAGCACCCAATC-
---CRCCCACGCA

MA0595.1_SREBF1/Jaspar

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:CAGCACCCAATC
-ATCACCCCAC-

MA0493.1_Klf1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAGCACCCAATC
GGCCACACCCA---