Information for 6-ACTCGGGTTGAT (Motif 3)


Reverse Opposite:

p-value:1e-25
log p-value:-5.907e+01
Information Content per bp:1.685
Number of Target Sequences with motif19.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif2.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets210.4 +/- 116.1bp
Average Position of motif in Background22.6 +/- 9.4bp
Strand Bias (log2 ratio + to - strand density)-1.2
Multiplicity (# of sites on avg that occur together)2.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0133.1_BRCA1/Jaspar

Match Rank:1
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:ACTCGGGTTGAT
----GTGTTGN-

PH0016.1_Cux1_1/Jaspar

Match Rank:2
Score:0.58
Offset:2
Orientation:forward strand
Alignment:ACTCGGGTTGAT-------
--ACCGGTTGATCACCTGA

MA0151.1_ARID3A/Jaspar

Match Rank:3
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:ACTCGGGTTGAT
------TTTAAT

MA0070.1_PBX1/Jaspar

Match Rank:4
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:ACTCGGGTTGAT--
--TTTGATTGATGN

PH0026.1_Duxbl/Jaspar

Match Rank:5
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:ACTCGGGTTGAT-------
--NNNNGTTGATTGGGTCG

PH0134.1_Pbx1/Jaspar

Match Rank:6
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:ACTCGGGTTGAT------
-NNNNNATTGATGNGTGN

HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer

Match Rank:7
Score:0.53
Offset:4
Orientation:forward strand
Alignment:ACTCGGGTTGAT--
----NTATYGATCH

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:ACTCGGGTTGAT----
------GTTAATGGCC

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:ACTCGGGTTGAT----
NNANTGATTGATNNNN

PB0144.1_Lef1_2/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:ACTCGGGTTGAT----
NNANTGATTGATNTTN