Information for 13-AGGAGCSCCT (Motif 9)


Reverse Opposite:

p-value:1e-16
log p-value:-3.911e+01
Information Content per bp:1.728
Number of Target Sequences with motif70.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif57.5
Percentage of Background Sequences with motif0.16%
Average Position of motif in Targets212.4 +/- 121.5bp
Average Position of motif in Background223.9 +/- 115.1bp
Strand Bias (log2 ratio + to - strand density)-0.3
Multiplicity (# of sites on avg that occur together)1.49
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL013.1_MED-1/Jaspar

Match Rank:1
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGGAGCSCCT
CGGAGC----

PB0203.1_Zfp691_2/Jaspar

Match Rank:2
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----AGGAGCSCCT--
NTNNNAGGAGTCTCNTN

PB0008.1_E2F2_1/Jaspar

Match Rank:3
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-AGGAGCSCCT----
NTCGCGCGCCTTNNN

PB0009.1_E2F3_1/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----AGGAGCSCCT-
ATAAGGGCGCGCGAT

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:5
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----AGGAGCSCCT
ADGGYAGYAGCATCT

PB0180.1_Sp4_2/Jaspar

Match Rank:6
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---AGGAGCSCCT--
CAAAGGCGTGGCCAG

PB0151.1_Myf6_2/Jaspar

Match Rank:7
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:AGGAGCSCCT------
-GGNGCGNCTGTTNNN

POL010.1_DCE_S_III/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AGGAGCSCCT
--CAGCC---

PB0052.1_Plagl1_1/Jaspar

Match Rank:9
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--AGGAGCSCCT----
NNNGGGGCGCCCCCNN

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:AGGAGCSCCT
GGGAGGACNG