Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 13239)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 36713)	% of Background Sequences with Motif
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-4	-1.103e+01	0.0043	2150.0	16.24%	5481.3	14.93%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e-3	-7.992e+00	0.0446	351.0	2.65%	808.2	2.20%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e-2	-6.517e+00	0.1301	490.0	3.70%	1186.9	3.23%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e-2	-6.271e+00	0.1301	2690.0	20.31%	7089.1	19.31%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e-2	-5.868e+00	0.1494	2970.0	22.43%	7868.8	21.44%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-2	-5.512e+00	0.1777	1817.0	13.72%	4751.0	12.94%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e-2	-5.072e+00	0.2366	944.0	7.13%	2417.0	6.58%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e-2	-4.968e+00	0.2366	835.0	6.31%	2128.2	5.80%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e-2	-4.742e+00	0.2559	1029.0	7.77%	2653.3	7.23%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e-2	-4.679e+00	0.2559	1575.0	11.89%	4126.4	11.24%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e-1	-4.599e+00	0.2559	602.0	4.55%	1518.6	4.14%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e-1	-4.332e+00	0.2890	6646.0	50.19%	18068.5	49.22%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e-1	-4.042e+00	0.3566	7896.0	59.63%	21557.0	58.72%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e-1	-3.601e+00	0.5145	1711.0	12.92%	4539.3	12.37%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e-1	-3.596e+00	0.5145	2349.0	17.74%	6279.3	17.11%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e-1	-3.243e+00	0.6441	410.0	3.10%	1041.4	2.84%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e-1	-3.048e+00	0.7372	5660.0	42.74%	15426.0	42.02%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e-1	-3.010e+00	0.7372	3698.0	27.93%	10015.4	27.28%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e-1	-2.957e+00	0.7372	1298.0	9.80%	3445.8	9.39%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e-1	-2.939e+00	0.7372	701.0	5.29%	1829.8	4.98%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e-1	-2.795e+00	0.7682	872.0	6.59%	2296.7	6.26%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e-1	-2.722e+00	0.7886	1126.0	8.50%	2988.6	8.14%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e-1	-2.672e+00	0.7930	3006.0	22.70%	8136.0	22.16%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e-1	-2.612e+00	0.8074	7928.0	59.87%	21749.4	59.25%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e-1	-2.608e+00	0.8074	89.0	0.67%	210.9	0.57%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e-1	-2.547e+00	0.8074	1461.0	11.03%	3909.7	10.65%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e-1	-2.520e+00	0.8074	2322.0	17.54%	6267.2	17.07%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e-1	-2.445e+00	0.8181	943.0	7.12%	2503.7	6.82%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e-1	-2.426e+00	0.8181	114.0	0.86%	277.5	0.76%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e-1	-2.421e+00	0.8181	2682.0	20.25%	7262.1	19.78%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e-1	-2.344e+00	0.8181	491.0	3.71%	1283.9	3.50%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.329e+00	0.8181	216.0	1.63%	547.2	1.49%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e-1	-2.329e+00	0.8181	216.0	1.63%	547.2	1.49%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	-2.265e+00	0.8181	447.0	3.38%	1167.4	3.18%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-2.071e+00	0.9509	2806.0	21.19%	7629.3	20.78%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-2.038e+00	0.9557	2089.0	15.78%	5660.2	15.42%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-2.027e+00	0.9557	1872.0	14.14%	5065.2	13.80%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-1.940e+00	0.9983	119.0	0.90%	298.7	0.81%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.919e+00	0.9983	487.0	3.68%	1287.1	3.51%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-1.881e+00	1.0000	3606.0	27.23%	9850.7	26.83%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-1.775e+00	1.0000	1357.0	10.25%	3670.0	10.00%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-1.714e+00	1.0000	1651.0	12.47%	4480.6	12.21%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-1.705e+00	1.0000	1402.0	10.59%	3797.2	10.34%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-1.688e+00	1.0000	664.0	5.01%	1778.5	4.84%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-1.639e+00	1.0000	4404.0	33.26%	12078.1	32.90%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.603e+00	1.0000	642.0	4.85%	1722.4	4.69%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-1.596e+00	1.0000	577.0	4.36%	1545.8	4.21%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-1.593e+00	1.0000	3149.0	23.78%	8616.0	23.47%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.497e+00	1.0000	195.0	1.47%	511.2	1.39%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.494e+00	1.0000	192.0	1.45%	504.0	1.37%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-1.464e+00	1.0000	4345.0	32.81%	11934.9	32.51%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-1.461e+00	1.0000	277.0	2.09%	734.5	2.00%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-1.400e+00	1.0000	1015.0	7.67%	2755.4	7.51%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-1.391e+00	1.0000	656.0	4.95%	1771.5	4.83%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	-1.321e+00	1.0000	1004.0	7.58%	2730.4	7.44%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.277e+00	1.0000	1016.0	7.67%	2766.3	7.54%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-1.276e+00	1.0000	155.0	1.17%	409.1	1.11%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-1.174e+00	1.0000	2691.0	20.32%	7395.7	20.15%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-1.172e+00	1.0000	841.0	6.35%	2292.0	6.24%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.156e+00	1.0000	2194.0	16.57%	6024.5	16.41%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.138e+00	1.0000	303.0	2.29%	817.1	2.23%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-1.131e+00	1.0000	2445.0	18.46%	6720.4	18.31%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-1.116e+00	1.0000	118.0	0.89%	313.8	0.85%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-1.109e+00	1.0000	5319.0	40.17%	14675.8	39.98%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-1.072e+00	1.0000	5464.0	41.26%	15082.6	41.09%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-1.067e+00	1.0000	28.0	0.21%	71.0	0.19%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.034e+00	1.0000	2233.0	16.86%	6145.2	16.74%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-1.026e+00	1.0000	1797.0	13.57%	4941.7	13.46%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-1.023e+00	1.0000	1676.0	12.66%	4607.5	12.55%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-1.023e+00	1.0000	1946.0	14.70%	5353.7	14.58%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-1.008e+00	1.0000	3160.0	23.86%	8712.8	23.73%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-9.790e-01	1.0000	2542.0	19.20%	7006.2	19.09%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-9.786e-01	1.0000	121.0	0.91%	325.2	0.89%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-9.754e-01	1.0000	697.0	5.26%	1909.2	5.20%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-9.584e-01	1.0000	735.0	5.55%	2015.0	5.49%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-9.287e-01	1.0000	31.0	0.23%	81.9	0.22%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-9.105e-01	1.0000	102.0	0.77%	275.5	0.75%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-9.005e-01	1.0000	351.0	2.65%	960.7	2.62%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-8.478e-01	1.0000	1706.0	12.88%	4709.9	12.83%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-8.378e-01	1.0000	533.0	4.03%	1466.2	3.99%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-8.082e-01	1.0000	529.0	3.99%	1457.4	3.97%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-7.906e-01	1.0000	1273.0	9.61%	3517.3	9.58%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-7.645e-01	1.0000	844.0	6.37%	2332.5	6.35%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-7.387e-01	1.0000	4277.0	32.30%	11847.8	32.27%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-7.297e-01	1.0000	441.0	3.33%	1219.6	3.32%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-7.119e-01	1.0000	21.0	0.16%	57.3	0.16%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-7.046e-01	1.0000	488.0	3.69%	1351.6	3.68%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-6.895e-01	1.0000	471.0	3.56%	1305.7	3.56%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-6.780e-01	1.0000	1980.0	14.95%	5490.2	14.96%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-6.664e-01	1.0000	2850.0	21.52%	7905.0	21.53%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-6.586e-01	1.0000	4738.0	35.78%	13140.6	35.80%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-6.563e-01	1.0000	371.0	2.80%	1030.7	2.81%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.468e-01	1.0000	1532.0	11.57%	4252.6	11.58%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-6.397e-01	1.0000	12.0	0.09%	33.6	0.09%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-5.521e-01	1.0000	4824.0	36.43%	13401.8	36.51%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-5.455e-01	1.0000	1862.0	14.06%	5183.3	14.12%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-5.264e-01	1.0000	322.0	2.43%	903.3	2.46%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-4.688e-01	1.0000	185.0	1.40%	524.8	1.43%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-4.482e-01	1.0000	402.0	3.04%	1133.1	3.09%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-4.384e-01	1.0000	153.0	1.16%	436.7	1.19%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-4.366e-01	1.0000	849.0	6.41%	2382.1	6.49%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-4.351e-01	1.0000	10759.0	81.25%	29871.4	81.37%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-4.329e-01	1.0000	218.0	1.65%	619.9	1.69%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-4.275e-01	1.0000	4008.0	30.27%	11167.6	30.42%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-4.247e-01	1.0000	102.0	0.77%	293.8	0.80%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-4.089e-01	1.0000	124.0	0.94%	356.5	0.97%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-4.062e-01	1.0000	29.0	0.22%	86.2	0.23%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-3.956e-01	1.0000	3961.0	29.91%	11045.9	30.09%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-3.934e-01	1.0000	588.0	4.44%	1659.6	4.52%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-3.888e-01	1.0000	853.0	6.44%	2400.4	6.54%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-3.821e-01	1.0000	51.0	0.39%	150.5	0.41%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-3.601e-01	1.0000	1494.0	11.28%	4193.6	11.42%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-3.556e-01	1.0000	2211.0	16.70%	6191.3	16.87%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-3.538e-01	1.0000	185.0	1.40%	532.8	1.45%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-3.517e-01	1.0000	307.0	2.32%	876.1	2.39%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-3.410e-01	1.0000	208.0	1.57%	599.0	1.63%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-3.322e-01	1.0000	4188.0	31.63%	11694.1	31.86%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.244e-01	1.0000	800.0	6.04%	2262.7	6.16%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-3.190e-01	1.0000	1654.0	12.49%	4648.3	12.66%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-3.079e-01	1.0000	31.0	0.23%	95.6	0.26%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-3.061e-01	1.0000	1521.0	11.49%	4280.4	11.66%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.019e-01	1.0000	455.0	3.44%	1298.7	3.54%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-2.964e-01	1.0000	37.0	0.28%	113.4	0.31%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-2.930e-01	1.0000	1041.0	7.86%	2942.1	8.01%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-2.771e-01	1.0000	1684.0	12.72%	4742.6	12.92%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-2.689e-01	1.0000	2376.0	17.94%	6674.8	18.18%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-2.642e-01	1.0000	675.0	5.10%	1922.7	5.24%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-2.596e-01	1.0000	783.0	5.91%	2226.3	6.06%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-2.593e-01	1.0000	297.0	2.24%	858.3	2.34%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-2.581e-01	1.0000	2988.0	22.56%	8382.5	22.83%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-2.576e-01	1.0000	7665.0	57.88%	21365.5	58.20%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-2.461e-01	1.0000	1864.0	14.08%	5253.5	14.31%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-2.454e-01	1.0000	730.0	5.51%	2080.7	5.67%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-2.429e-01	1.0000	1734.0	13.09%	4891.4	13.32%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-2.328e-01	1.0000	490.0	3.70%	1407.1	3.83%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-2.270e-01	1.0000	107.0	0.81%	320.1	0.87%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-2.264e-01	1.0000	557.0	4.21%	1597.5	4.35%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-2.171e-01	1.0000	282.0	2.13%	821.1	2.24%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-2.129e-01	1.0000	6155.0	46.48%	17200.3	46.86%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-2.030e-01	1.0000	440.0	3.32%	1271.7	3.46%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-1.755e-01	1.0000	4561.0	34.44%	12793.8	34.85%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.745e-01	1.0000	144.0	1.09%	432.9	1.18%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.727e-01	1.0000	637.0	4.81%	1834.8	5.00%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-1.614e-01	1.0000	87.0	0.66%	268.7	0.73%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.532e-01	1.0000	3066.0	23.15%	8643.3	23.55%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.466e-01	1.0000	140.0	1.06%	424.3	1.16%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.383e-01	1.0000	108.0	0.82%	332.4	0.91%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-1.346e-01	1.0000	101.0	0.76%	312.8	0.85%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-1.308e-01	1.0000	199.0	1.50%	597.0	1.63%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-1.274e-01	1.0000	253.0	1.91%	753.4	2.05%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.244e-01	1.0000	173.0	1.31%	523.8	1.43%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-1.186e-01	1.0000	1397.0	10.55%	3992.0	10.87%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-1.130e-01	1.0000	5290.0	39.95%	14858.2	40.48%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.125e-01	1.0000	2178.0	16.45%	6185.5	16.85%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-1.097e-01	1.0000	1854.0	14.00%	5279.1	14.38%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-1.082e-01	1.0000	1172.0	8.85%	3364.6	9.17%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.069e-01	1.0000	758.0	5.72%	2196.5	5.98%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-1.049e-01	1.0000	3856.0	29.12%	10875.7	29.63%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-9.611e-02	1.0000	5153.0	38.91%	14491.4	39.48%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-8.510e-02	1.0000	6236.0	47.09%	17508.7	47.70%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-8.397e-02	1.0000	732.0	5.53%	2132.5	5.81%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-8.385e-02	1.0000	54.0	0.41%	179.5	0.49%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-8.296e-02	1.0000	1680.0	12.69%	4807.4	13.10%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-7.907e-02	1.0000	399.0	3.01%	1185.3	3.23%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-7.613e-02	1.0000	661.0	4.99%	1934.3	5.27%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-7.592e-02	1.0000	2329.0	17.59%	6633.9	18.07%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-7.321e-02	1.0000	1690.0	12.76%	4842.9	13.19%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-7.299e-02	1.0000	599.0	4.52%	1759.1	4.79%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-6.960e-02	1.0000	493.0	3.72%	1459.0	3.97%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-6.762e-02	1.0000	226.0	1.71%	691.0	1.88%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-6.433e-02	1.0000	178.0	1.34%	551.4	1.50%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-6.265e-02	1.0000	14.0	0.11%	56.8	0.15%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-6.263e-02	1.0000	171.0	1.29%	531.1	1.45%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-6.018e-02	1.0000	1131.0	8.54%	3276.3	8.92%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-5.643e-02	1.0000	1619.0	12.23%	4656.1	12.68%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-5.301e-02	1.0000	2152.0	16.25%	6158.3	16.78%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-5.085e-02	1.0000	332.0	2.51%	1004.8	2.74%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-4.899e-02	1.0000	163.0	1.23%	512.4	1.40%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	-4.687e-02	1.0000	948.0	7.16%	2768.4	7.54%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-4.456e-02	1.0000	4939.0	37.30%	13955.6	38.02%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-4.446e-02	1.0000	335.0	2.53%	1016.7	2.77%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-4.321e-02	1.0000	1151.0	8.69%	3347.6	9.12%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-3.897e-02	1.0000	697.0	5.26%	2060.6	5.61%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-3.322e-02	1.0000	3695.0	27.90%	10507.6	28.62%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-3.312e-02	1.0000	2108.0	15.92%	6060.3	16.51%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-3.255e-02	1.0000	2621.0	19.79%	7502.7	20.44%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-3.184e-02	1.0000	177.0	1.34%	561.7	1.53%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-3.131e-02	1.0000	617.0	4.66%	1838.1	5.01%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-3.125e-02	1.0000	1452.0	10.97%	4213.1	11.48%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	-3.032e-02	1.0000	706.0	5.33%	2094.7	5.71%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-2.998e-02	1.0000	126.0	0.95%	410.1	1.12%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-2.965e-02	1.0000	241.0	1.82%	751.9	2.05%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-2.904e-02	1.0000	481.0	3.63%	1449.9	3.95%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-2.709e-02	1.0000	986.0	7.45%	2897.0	7.89%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-2.504e-02	1.0000	2207.0	16.67%	6353.6	17.31%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	-2.461e-02	1.0000	429.0	3.24%	1303.7	3.55%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-1.967e-02	1.0000	185.0	1.40%	593.7	1.62%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.890e-02	1.0000	1474.0	11.13%	4297.4	11.71%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-1.888e-02	1.0000	1145.0	8.65%	3363.0	9.16%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.819e-02	1.0000	1902.0	14.36%	5509.3	15.01%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.648e-02	1.0000	8192.0	61.86%	23038.8	62.76%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-1.638e-02	1.0000	2273.0	17.17%	6560.7	17.87%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-1.608e-02	1.0000	3758.0	28.38%	10727.1	29.22%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.425e-02	1.0000	205.0	1.55%	658.3	1.79%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.384e-02	1.0000	949.0	7.17%	2815.9	7.67%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-1.373e-02	1.0000	6792.0	51.29%	19179.2	52.25%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-1.252e-02	1.0000	1251.0	9.45%	3680.6	10.03%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.206e-02	1.0000	872.0	6.59%	2599.8	7.08%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-1.147e-02	1.0000	2361.0	17.83%	6825.2	18.59%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-1.097e-02	1.0000	3350.0	25.30%	9606.9	26.17%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-1.083e-02	1.0000	2376.0	17.94%	6870.2	18.71%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.056e-02	1.0000	202.0	1.53%	654.2	1.78%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.006e-02	1.0000	1703.0	12.86%	4972.9	13.55%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-9.497e-03	1.0000	1669.0	12.60%	4878.3	13.29%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-8.602e-03	1.0000	3318.0	25.06%	9529.1	25.96%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-7.365e-03	1.0000	9605.0	72.53%	26970.1	73.47%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-7.274e-03	1.0000	1268.0	9.58%	3748.5	10.21%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-6.612e-03	1.0000	2170.0	16.39%	6311.2	17.19%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-5.929e-03	1.0000	3552.0	26.82%	10204.4	27.80%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-5.920e-03	1.0000	819.0	6.18%	2468.8	6.73%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-5.273e-03	1.0000	110.0	0.83%	384.4	1.05%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-4.989e-03	1.0000	728.0	5.50%	2210.4	6.02%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-4.928e-03	1.0000	7597.0	57.37%	21465.9	58.47%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-4.827e-03	1.0000	490.0	3.70%	1519.2	4.14%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-4.221e-03	1.0000	663.0	5.01%	2026.2	5.52%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-3.815e-03	1.0000	4523.0	34.16%	12943.0	35.26%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-3.567e-03	1.0000	3664.0	27.67%	10543.3	28.72%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-3.417e-03	1.0000	1778.0	13.43%	5227.3	14.24%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.910e-03	1.0000	6028.0	45.52%	17148.8	46.71%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-2.859e-03	1.0000	447.0	3.38%	1404.8	3.83%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-2.779e-03	1.0000	2539.0	19.17%	7390.6	20.13%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.779e-03	1.0000	457.0	3.45%	1434.5	3.91%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-2.474e-03	1.0000	1303.0	9.84%	3884.6	10.58%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-2.307e-03	1.0000	3197.0	24.14%	9252.5	25.20%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-1.449e-03	1.0000	1208.0	9.12%	3628.3	9.88%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-1.302e-03	1.0000	3330.0	25.15%	9651.3	26.29%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-1.271e-03	1.0000	574.0	4.33%	1794.4	4.89%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-1.270e-03	1.0000	559.0	4.22%	1750.9	4.77%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-1.134e-03	1.0000	2392.0	18.06%	7010.2	19.10%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-1.042e-03	1.0000	1036.0	7.82%	3142.5	8.56%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-9.700e-04	1.0000	2510.0	18.95%	7350.5	20.02%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-6.890e-04	1.0000	1644.0	12.42%	4900.0	13.35%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-5.750e-04	1.0000	704.0	5.32%	2192.8	5.97%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-5.490e-04	1.0000	731.0	5.52%	2272.3	6.19%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-5.180e-04	1.0000	821.0	6.20%	2536.4	6.91%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-4.920e-04	1.0000	933.0	7.05%	2863.5	7.80%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-3.210e-04	1.0000	2037.0	15.38%	6046.6	16.47%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-2.950e-04	1.0000	1421.0	10.73%	4286.8	11.68%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-2.750e-04	1.0000	1453.0	10.97%	4380.2	11.93%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-2.310e-04	1.0000	1020.0	7.70%	3134.1	8.54%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-1.610e-04	1.0000	3417.0	25.80%	9979.9	27.19%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.580e-04	1.0000	1638.0	12.37%	4927.7	13.42%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.350e-04	1.0000	744.0	5.62%	2340.9	6.38%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-1.130e-04	1.0000	2037.0	15.38%	6079.7	16.56%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-8.900e-05	1.0000	3366.0	25.42%	9857.1	26.85%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-7.200e-05	1.0000	3153.0	23.81%	9263.6	25.23%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-1.700e-05	1.0000	2887.0	21.80%	8556.3	23.31%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.000e-05	1.0000	8060.0	60.87%	23003.9	62.66%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-4.000e-06	1.0000	3461.0	26.14%	10229.5	27.87%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-1.000e-06	1.0000	2642.0	19.95%	7947.6	21.65%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-1.000e-06	1.0000	2058.0	15.54%	6278.4	17.10%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-0.000e+00	1.0000	4014.0	30.31%	11889.0	32.39%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-0.000e+00	1.0000	2014.0	15.21%	6229.4	16.97%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-0.000e+00	1.0000	3513.0	26.53%	10626.7	28.95%