Information for 16-RTCCACKGAC (Motif 11)


Reverse Opposite:

p-value:1e-9
log p-value:-2.201e+01
Information Content per bp:1.889
Number of Target Sequences with motif28.0
Percentage of Target Sequences with motif0.88%
Number of Background Sequences with motif95.2
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets155.1 +/- 91.6bp
Average Position of motif in Background153.3 +/- 87.6bp
Strand Bias (log2 ratio + to - strand density)1.8
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0130.1_ZNF354C/Jaspar

Match Rank:1
Score:0.70
Offset:0
Orientation:forward strand
Alignment:RTCCACKGAC
ATCCAC----

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:2
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---RTCCACKGAC
SSAATCCACANN-

POL004.1_CCAAT-box/Jaspar

Match Rank:3
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---RTCCACKGAC
ACTAGCCAATCA-

Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer

Match Rank:4
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--RTCCACKGAC----
TGACCCAGTGACCTAC

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:5
Score:0.56
Offset:1
Orientation:forward strand
Alignment:RTCCACKGAC-
-NTCAAGGTCA

PB0028.1_Hbp1_1/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---RTCCACKGAC---
NNCATTCATTCATNNN

MA0479.1_FOXH1/Jaspar

Match Rank:7
Score:0.55
Offset:-4
Orientation:forward strand
Alignment:----RTCCACKGAC
TCCAATCCACA---

MA0002.2_RUNX1/Jaspar

Match Rank:8
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-RTCCACKGAC
AAACCACAGAN

FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer

Match Rank:9
Score:0.54
Offset:-2
Orientation:reverse strand
Alignment:--RTCCACKGAC--
NAGGTCANTGACCT

NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---RTCCACKGAC
ATTTTCCATT---