Information for 18-CGCCGCGGCTTT (Motif 12)


Reverse Opposite:

p-value:1e-8
log p-value:-2.062e+01
Information Content per bp:1.837
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif0.32%
Number of Background Sequences with motif9.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets149.5 +/- 76.2bp
Average Position of motif in Background133.1 +/- 60.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)2.88
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0048.1_NHLH1/Jaspar

Match Rank:1
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-CGCCGCGGCTTT
GCGCAGCTGCGT-

MA0146.2_Zfx/Jaspar

Match Rank:2
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CGCCGCGGCTTT
GGGGCCGAGGCCTG

PB0180.1_Sp4_2/Jaspar

Match Rank:3
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CGCCGCGGCTTT-
NNGGCCACGCCTTTN

PB0010.1_Egr1_1/Jaspar

Match Rank:4
Score:0.54
Offset:-2
Orientation:forward strand
Alignment:--CGCCGCGGCTTT
TCCGCCCCCGCATT

PB0151.1_Myf6_2/Jaspar

Match Rank:5
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:CGCCGCGGCTTT----
-GGNGCGNCTGTTNNN

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:6
Score:0.49
Offset:1
Orientation:forward strand
Alignment:CGCCGCGGCTTT
-NCAGCTGCTG-

MA0521.1_Tcf12/Jaspar

Match Rank:7
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:CGCCGCGGCTTT-
--NNGCAGCTGTT

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:8
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CGCCGCGGCTTT
AGCAGCTGCTNN

MA0500.1_Myog/Jaspar

Match Rank:9
Score:0.49
Offset:2
Orientation:reverse strand
Alignment:CGCCGCGGCTTT-
--NNGCAGCTGTC

PB0202.1_Zfp410_2/Jaspar

Match Rank:10
Score:0.48
Offset:-6
Orientation:forward strand
Alignment:------CGCCGCGGCTTT
TCACCCCGCCCCAAATT-