Information for 17-AACAACCGGT (Motif 13)


Reverse Opposite:

p-value:1e-8
log p-value:-1.986e+01
Information Content per bp:1.530
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif3.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets93.0 +/- 41.2bp
Average Position of motif in Background103.4 +/- 68.4bp
Strand Bias (log2 ratio + to - strand density)2.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0133.1_BRCA1/Jaspar

Match Rank:1
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AACAACCGGT
-ACAACAC--

PB0020.1_Gabpa_1/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---AACAACCGGT----
NNNNACTTCCGGTATNN

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AACAACCGGT
RNAACAATGG--

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-AACAACCGGT
GAACAATGGN-

PB0046.1_Mybl1_1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AACAACCGGT-----
TTGAAAACCGTTAATTT

MA0091.1_TAL1::TCF3/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AACAACCGGT
CGACCATCTGTT

PB0119.1_Foxa2_2/Jaspar

Match Rank:7
Score:0.60
Offset:-6
Orientation:forward strand
Alignment:------AACAACCGGT
AAAAATAACAAACGG-

PH0016.1_Cux1_1/Jaspar

Match Rank:8
Score:0.60
Offset:-7
Orientation:reverse strand
Alignment:-------AACAACCGGT
TNAGNTGATCAACCGGT

PB0045.1_Myb_1/Jaspar

Match Rank:9
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--AACAACCGGT-----
ATGGAAACCGTTATTTT

ETS(ETS)/Promoter/Homer

Match Rank:10
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:AACAACCGGT-
-ACTTCCGGTT