Information for 20-GGAACAGCACCC (Motif 16)


Reverse Opposite:

p-value:1e-7
log p-value:-1.834e+01
Information Content per bp:1.820
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif32.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets152.1 +/- 90.7bp
Average Position of motif in Background147.6 +/- 84.5bp
Strand Bias (log2 ratio + to - strand density)3.4
Multiplicity (# of sites on avg that occur together)3.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---GGAACAGCACCC
CCAGGAACAG-----

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GGAACAGCACCC
--CACAGN----

POL010.1_DCE_S_III/Jaspar

Match Rank:3
Score:0.55
Offset:4
Orientation:forward strand
Alignment:GGAACAGCACCC
----CAGCC---

CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer

Match Rank:4
Score:0.54
Offset:-11
Orientation:reverse strand
Alignment:-----------GGAACAGCACCC
TGGCCANNNNNGGAACTGCA---

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:5
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GGAACAGCACCC
ADGGYAGYAGCATCT

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GGAACAGCACCC
GGGAGGACNG---

MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GGAACAGCACCC
TGAGTCAGCA---

PB0130.1_Gm397_2/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GGAACAGCACCC------
--AGCGGCACACACGCAA

POL013.1_MED-1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GGAACAGCACCC
CGGAGC-------

MA0111.1_Spz1/Jaspar

Match Rank:10
Score:0.53
Offset:-3
Orientation:forward strand
Alignment:---GGAACAGCACCC
AGGGTAACAGC----