Information for 9-TCGCATAG (Motif 19)


Reverse Opposite:

p-value:1e-6
log p-value:-1.602e+01
Information Content per bp:1.530
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif0.44%
Number of Background Sequences with motif33.3
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets115.0 +/- 86.4bp
Average Position of motif in Background163.7 +/- 83.7bp
Strand Bias (log2 ratio + to - strand density)2.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0161.1_Rxra_2/Jaspar

Match Rank:1
Score:0.63
Offset:0
Orientation:forward strand
Alignment:TCGCATAG--------
TCGCGAAGGTTGTACT

PH0145.1_Pou2f3/Jaspar

Match Rank:2
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------TCGCATAG--
TNTAATTTGCATACNA

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--TCGCATAG
ATTTGCATAA

PH0144.1_Pou2f2/Jaspar

Match Rank:4
Score:0.62
Offset:-6
Orientation:reverse strand
Alignment:------TCGCATAG--
TNTAATTTGCATANNN

Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--TCGCATAG
ATTTGCATAT

PB0029.1_Hic1_1/Jaspar

Match Rank:6
Score:0.57
Offset:-7
Orientation:reverse strand
Alignment:-------TCGCATAG-
NGTAGGTTGGCATNNN

PB0106.1_Arid5a_2/Jaspar

Match Rank:7
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----TCGCATAG----
TNNTTTCGTATTNNANN

MA0507.1_POU2F2/Jaspar

Match Rank:8
Score:0.57
Offset:-5
Orientation:forward strand
Alignment:-----TCGCATAG
TTCATTTGCATAT

MA0033.1_FOXL1/Jaspar

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TCGCATAG
TATACATA-

PB0098.1_Zfp410_1/Jaspar

Match Rank:10
Score:0.56
Offset:-7
Orientation:reverse strand
Alignment:-------TCGCATAG--
NNNTCCATCCCATAANN