Information for 4-GGAATCATCA (Motif 2)


Reverse Opposite:

p-value:1e-45
log p-value:-1.052e+02
Information Content per bp:1.949
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif1.30%
Number of Background Sequences with motif19.8
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets142.0 +/- 89.7bp
Average Position of motif in Background130.7 +/- 94.9bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0037.1_Hdx/Jaspar

Match Rank:1
Score:0.72
Offset:-5
Orientation:forward strand
Alignment:-----GGAATCATCA--
AAGGCGAAATCATCGCA

PH0017.1_Cux1_2/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GGAATCATCA---
TAGTGATCATCATTA

PH0166.1_Six6_2/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GGAATCATCA--
AATAGGGTATCAATATT

PH0161.1_Six1/Jaspar

Match Rank:4
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----GGAATCATCA--
GATGGGGTATCATTTTT

MA0479.1_FOXH1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-GGAATCATCA
TCCAATCCACA

PB0142.1_Jundm2_2/Jaspar

Match Rank:6
Score:0.62
Offset:-4
Orientation:reverse strand
Alignment:----GGAATCATCA--
NNGGTGACTCATCANN

Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer

Match Rank:7
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGAATCATCA
TGACTCAGCA

Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GGAATCATCA--
SSAATCCACANN

PB0059.1_Six6_1/Jaspar

Match Rank:9
Score:0.61
Offset:-5
Orientation:forward strand
Alignment:-----GGAATCATCA--
AATAGGGTATCATATAT

MA0491.1_JUND/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GGAATCATCA
GGTGACTCATC-