Information for 24-DGAGTGGGCCCN (Motif 24)


Reverse Opposite:

p-value:1e-4
log p-value:-1.128e+01
Information Content per bp:1.446
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.13%
Number of Background Sequences with motif2.8
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets170.5 +/- 70.2bp
Average Position of motif in Background94.9 +/- 42.8bp
Strand Bias (log2 ratio + to - strand density)1.2
Multiplicity (# of sites on avg that occur together)2.50
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0114.1_Egr1_2/Jaspar

Match Rank:1
Score:0.73
Offset:-3
Orientation:forward strand
Alignment:---DGAGTGGGCCCN-
TGCGGAGTGGGACTGG

PB0052.1_Plagl1_1/Jaspar

Match Rank:2
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-DGAGTGGGCCCN---
TTGGGGGCGCCCCTAG

Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.64
Offset:0
Orientation:forward strand
Alignment:DGAGTGGGCCCN
TGCGTGGGYG--

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:4
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-DGAGTGGGCCCN
TTGAGTGSTT---

Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:DGAGTGGGCCCN
NGCGTGGGCGGR

MA0122.1_Nkx3-2/Jaspar

Match Rank:6
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-DGAGTGGGCCCN
TTAAGTGGA----

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--DGAGTGGGCCCN
CGTGGGTGGTCC--

MA0503.1_Nkx2-5_(var.2)/Jaspar

Match Rank:8
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--DGAGTGGGCCCN
CTTGAGTGGCT---

POL011.1_XCPE1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:DGAGTGGGCCCN
-GGGCGGGACC-

MA0472.1_EGR2/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:reverse strand
Alignment:-DGAGTGGGCCCN--
GTGCGTGGGCGGGNG