Information for 20-GCTGTCAG (Motif 27)


Reverse Opposite:

p-value:1e-4
log p-value:-9.569e+00
Information Content per bp:1.885
Number of Target Sequences with motif109.0
Percentage of Target Sequences with motif3.44%
Number of Background Sequences with motif1093.1
Percentage of Background Sequences with motif2.34%
Average Position of motif in Targets159.8 +/- 94.0bp
Average Position of motif in Background159.9 +/- 89.1bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0498.1_Meis1/Jaspar

Match Rank:1
Score:0.84
Offset:-1
Orientation:forward strand
Alignment:-GCTGTCAG------
AGCTGTCACTCACCT

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:2
Score:0.80
Offset:-1
Orientation:forward strand
Alignment:-GCTGTCAG-
VGCTGWCAVB

PH0169.1_Tgif1/Jaspar

Match Rank:3
Score:0.77
Offset:-5
Orientation:reverse strand
Alignment:-----GCTGTCAG----
NNNCAGCTGTCAATATN

PH0170.1_Tgif2/Jaspar

Match Rank:4
Score:0.73
Offset:-5
Orientation:forward strand
Alignment:-----GCTGTCAG---
AACTAGCTGTCAATAC

POL009.1_DCE_S_II/Jaspar

Match Rank:5
Score:0.72
Offset:0
Orientation:forward strand
Alignment:GCTGTCAG
GCTGTG--

PH0141.1_Pknox2/Jaspar

Match Rank:6
Score:0.71
Offset:-5
Orientation:forward strand
Alignment:-----GCTGTCAG---
AAGCACCTGTCAATAT

PH0105.1_Meis3/Jaspar

Match Rank:7
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----GCTGTCAG---
AATTACCTGTCAATAC

PH0102.1_Meis1/Jaspar

Match Rank:8
Score:0.70
Offset:-5
Orientation:forward strand
Alignment:-----GCTGTCAG---
AACGAGCTGTCAATAC

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:9
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:GCTGTCAG----
SCTGTCARCACC

MA0117.1_Mafb/Jaspar

Match Rank:10
Score:0.69
Offset:0
Orientation:forward strand
Alignment:GCTGTCAG
GCTGACGC