Information for 9-CATCAAACGGAA (Motif 3)


Reverse Opposite:

p-value:1e-25
log p-value:-5.804e+01
Information Content per bp:1.963
Number of Target Sequences with motif15.0
Percentage of Target Sequences with motif0.47%
Number of Background Sequences with motif2.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets164.5 +/- 89.3bp
Average Position of motif in Background174.7 +/- 107.3bp
Strand Bias (log2 ratio + to - strand density)3.8
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0082.1_Tcf3_1/Jaspar

Match Rank:1
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CATCAAACGGAA-
TATAGATCAAAGGAAAA

PB0083.1_Tcf7_1/Jaspar

Match Rank:2
Score:0.67
Offset:-4
Orientation:forward strand
Alignment:----CATCAAACGGAA-
TATAGATCAAAGGAAAA

Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer

Match Rank:3
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CATCAAACGGAA
ACATCAAAGGNA-

PB0084.1_Tcf7l2_1/Jaspar

Match Rank:4
Score:0.67
Offset:-4
Orientation:reverse strand
Alignment:----CATCAAACGGAA-
NNNAGATCAAAGGANNN

PB0040.1_Lef1_1/Jaspar

Match Rank:5
Score:0.66
Offset:-4
Orientation:reverse strand
Alignment:----CATCAAACGGAA-
NANAGATCAAAGGGNNN

MA0523.1_TCF7L2/Jaspar

Match Rank:6
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---CATCAAACGGAA
AAAGATCAAAGGAA-

TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer

Match Rank:7
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CATCAAACGGAA
ACWTCAAAGG---

MA0151.1_ARID3A/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CATCAAACGGAA
-ATTAAA-----

MF0001.1_ETS_class/Jaspar

Match Rank:9
Score:0.62
Offset:5
Orientation:forward strand
Alignment:CATCAAACGGAA-
-----ACCGGAAG

MA0028.1_ELK1/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CATCAAACGGAA-
---GAGCCGGAAG