Information for 15-CAGGTGAGCATC (Motif 9)


Reverse Opposite:

p-value:1e-10
log p-value:-2.354e+01
Information Content per bp:1.955
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.25%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets143.7 +/- 68.6bp
Average Position of motif in Background190.3 +/- 102.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)2.38
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MA0103.2_ZEB1/Jaspar

Match Rank:1
Score:0.77
Offset:0
Orientation:reverse strand
Alignment:CAGGTGAGCATC
CAGGTGAGG---

E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer

Match Rank:2
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--CAGGTGAGCATC
NNCAGGTGNN----

SD0001.1_at_AC_acceptor/Jaspar

Match Rank:3
Score:0.66
Offset:0
Orientation:forward strand
Alignment:CAGGTGAGCATC
CAGGTAAGTAT-

PB0089.1_Tcfe2a_1/Jaspar

Match Rank:4
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CAGGTGAGCATC
ATCCACAGGTGCGAAAA

MA0526.1_USF2/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CAGGTGAGCATC
GTCATGTGACC---

MA0093.2_USF1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAGGTGAGCATC
GCCACGTGACC---

Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:CAGGTGAGCATC
-AGGTGTTAAT-

MA0464.1_Bhlhe40/Jaspar

Match Rank:8
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CAGGTGAGCATC
NTGCACGTGAG----

PB0007.1_Bhlhb2_1/Jaspar

Match Rank:9
Score:0.59
Offset:-8
Orientation:forward strand
Alignment:--------CAGGTGAGCATC--
GGAAGAGTCACGTGACCAATAC

PB0029.1_Hic1_1/Jaspar

Match Rank:10
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--CAGGTGAGCATC--
NGTAGGTTGGCATNNN