Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 3170)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 46874)	% of Background Sequences with Motif
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e-3	-8.348e+00	0.0625	71.0	2.24%	670.3	1.43%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e-3	-7.055e+00	0.1139	94.0	2.97%	986.9	2.11%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e-2	-5.253e+00	0.4604	45.0	1.42%	439.4	0.94%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e-2	-4.703e+00	0.5983	67.0	2.12%	728.5	1.56%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e-1	-4.510e+00	0.5983	638.0	20.15%	8663.8	18.54%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e-1	-3.866e+00	0.9218	137.0	4.33%	1692.5	3.62%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e-1	-3.807e+00	0.9218	307.0	9.70%	4048.9	8.67%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e-1	-3.217e+00	1.0000	87.0	2.75%	1056.9	2.26%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e-1	-3.126e+00	1.0000	241.0	7.61%	3188.3	6.82%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e-1	-2.988e+00	1.0000	312.0	9.85%	4204.6	9.00%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e-1	-2.864e+00	1.0000	52.0	1.64%	608.4	1.30%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e-1	-2.709e+00	1.0000	702.0	22.17%	9844.0	21.07%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e-1	-2.630e+00	1.0000	173.0	5.46%	2282.3	4.88%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e-1	-2.527e+00	1.0000	122.0	3.85%	1580.5	3.38%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e-1	-2.514e+00	1.0000	72.0	2.27%	894.4	1.91%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e-1	-2.312e+00	1.0000	165.0	5.21%	2200.7	4.71%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e-1	-2.304e+00	1.0000	49.0	1.55%	595.6	1.27%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-2.272e+00	1.0000	35.0	1.11%	410.6	0.88%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	-2.106e+00	1.0000	2109.0	66.61%	30659.4	65.62%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	-2.098e+00	1.0000	223.0	7.04%	3045.3	6.52%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer	AGGTCANTGACCTB	1e0	-2.036e+00	1.0000	180.0	5.69%	2441.5	5.23%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	-2.033e+00	1.0000	476.0	15.03%	6691.0	14.32%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-2.013e+00	1.0000	11.0	0.35%	110.8	0.24%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-1.967e+00	1.0000	118.0	3.73%	1572.7	3.37%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-1.961e+00	1.0000	101.0	3.19%	1334.4	2.86%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	-1.946e+00	1.0000	1197.0	37.81%	17231.6	36.88%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-1.843e+00	1.0000	85.0	2.68%	1120.4	2.40%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-1.834e+00	1.0000	245.0	7.74%	3394.9	7.27%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-1.815e+00	1.0000	151.0	4.77%	2054.9	4.40%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	-1.784e+00	1.0000	290.0	9.16%	4048.8	8.66%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-1.724e+00	1.0000	173.0	5.46%	2378.8	5.09%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	-1.701e+00	1.0000	442.0	13.96%	6260.8	13.40%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.682e+00	1.0000	48.0	1.52%	617.8	1.32%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-1.628e+00	1.0000	105.0	3.32%	1421.6	3.04%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-1.607e+00	1.0000	132.0	4.17%	1807.9	3.87%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.599e+00	1.0000	85.0	2.68%	1141.4	2.44%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	-1.562e+00	1.0000	472.0	14.91%	6724.5	14.39%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-1.535e+00	1.0000	239.0	7.55%	3352.1	7.17%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer	GGGGGAATCCCC	1e0	-1.408e+00	1.0000	62.0	1.96%	833.1	1.78%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-1.366e+00	1.0000	373.0	11.78%	5325.2	11.40%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-1.351e+00	1.0000	173.0	5.46%	2428.2	5.20%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-1.348e+00	1.0000	44.0	1.39%	584.6	1.25%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-1.301e+00	1.0000	33.0	1.04%	433.7	0.93%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-1.300e+00	1.0000	55.0	1.74%	743.4	1.59%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.268e+00	1.0000	375.0	11.84%	5375.3	11.50%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-1.267e+00	1.0000	451.0	14.25%	6484.6	13.88%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-1.258e+00	1.0000	188.0	5.94%	2659.3	5.69%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	-1.250e+00	1.0000	1261.0	39.83%	18375.4	39.33%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-1.238e+00	1.0000	18.0	0.57%	228.6	0.49%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-1.217e+00	1.0000	857.0	27.07%	12445.8	26.64%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-1.207e+00	1.0000	169.0	5.34%	2392.8	5.12%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-1.197e+00	1.0000	897.0	28.33%	13039.9	27.91%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	-1.136e+00	1.0000	404.0	12.76%	5829.4	12.48%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-1.130e+00	1.0000	29.0	0.92%	388.3	0.83%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson et al.)/Homer	GYCATCMATCAT	1e0	-1.111e+00	1.0000	49.0	1.55%	674.7	1.44%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-1.089e+00	1.0000	24.0	0.76%	320.0	0.68%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-1.009e+00	1.0000	522.0	16.49%	7593.0	16.25%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	-1.002e+00	1.0000	158.0	4.99%	2266.3	4.85%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	-9.944e-01	1.0000	1389.0	43.87%	20356.1	43.56%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	-9.551e-01	1.0000	485.0	15.32%	7065.4	15.12%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-9.378e-01	1.0000	74.0	2.34%	1053.3	2.25%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-9.109e-01	1.0000	120.0	3.79%	1727.1	3.70%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	-9.090e-01	1.0000	246.0	7.77%	3571.1	7.64%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-9.030e-01	1.0000	250.0	7.90%	3631.6	7.77%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-8.970e-01	1.0000	839.0	26.50%	12291.4	26.31%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-8.896e-01	1.0000	72.0	2.27%	1030.3	2.20%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-8.689e-01	1.0000	86.0	2.72%	1237.7	2.65%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-8.547e-01	1.0000	24.0	0.76%	336.2	0.72%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-8.312e-01	1.0000	624.0	19.71%	9150.7	19.58%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-8.277e-01	1.0000	202.0	6.38%	2944.1	6.30%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-8.087e-01	1.0000	42.0	1.33%	602.8	1.29%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-8.010e-01	1.0000	503.0	15.89%	7379.9	15.79%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-7.980e-01	1.0000	640.0	20.21%	9398.5	20.11%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e0	-7.979e-01	1.0000	238.0	7.52%	3481.0	7.45%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	-7.857e-01	1.0000	90.0	2.84%	1308.6	2.80%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-7.855e-01	1.0000	25.0	0.79%	357.0	0.76%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-7.741e-01	1.0000	523.0	16.52%	7683.5	16.44%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-7.741e-01	1.0000	814.0	25.71%	11972.0	25.62%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-7.617e-01	1.0000	116.0	3.66%	1694.9	3.63%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	-7.616e-01	1.0000	878.0	27.73%	12921.0	27.65%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	-7.609e-01	1.0000	614.0	19.39%	9029.5	19.32%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-7.600e-01	1.0000	197.0	6.22%	2886.3	6.18%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-7.575e-01	1.0000	105.0	3.32%	1533.5	3.28%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-7.278e-01	1.0000	158.0	4.99%	2319.1	4.96%
EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-7.278e-01	1.0000	4.0	0.13%	53.5	0.11%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	-7.269e-01	1.0000	140.0	4.42%	2054.1	4.40%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-7.144e-01	1.0000	189.0	5.97%	2779.4	5.95%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-7.051e-01	1.0000	194.0	6.13%	2855.1	6.11%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-6.964e-01	1.0000	789.0	24.92%	11637.8	24.91%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-6.893e-01	1.0000	285.0	9.00%	4202.6	8.99%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e0	-6.794e-01	1.0000	84.0	2.65%	1237.0	2.65%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	-6.744e-01	1.0000	789.0	24.92%	11647.1	24.93%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	GCTGTGGTTW	1e0	-6.549e-01	1.0000	305.0	9.63%	4508.5	9.65%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-6.527e-01	1.0000	721.0	22.77%	10653.3	22.80%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-6.515e-01	1.0000	486.0	15.35%	7183.6	15.37%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	-6.510e-01	1.0000	306.0	9.67%	4524.6	9.68%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	-6.497e-01	1.0000	357.0	11.28%	5278.5	11.30%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-6.475e-01	1.0000	957.0	30.23%	14140.3	30.26%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-6.136e-01	1.0000	288.0	9.10%	4271.0	9.14%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-6.122e-01	1.0000	33.0	1.04%	491.5	1.05%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	-5.976e-01	1.0000	248.0	7.83%	3683.1	7.88%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-5.937e-01	1.0000	195.0	6.16%	2899.2	6.20%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-5.920e-01	1.0000	81.0	2.56%	1208.3	2.59%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-5.903e-01	1.0000	130.0	4.11%	1936.5	4.14%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	-5.672e-01	1.0000	186.0	5.87%	2773.8	5.94%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-5.397e-01	1.0000	360.0	11.37%	5363.5	11.48%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-5.354e-01	1.0000	1207.0	38.12%	17894.8	38.30%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-5.300e-01	1.0000	31.0	0.98%	471.0	1.01%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-5.296e-01	1.0000	389.0	12.29%	5797.5	12.41%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-5.169e-01	1.0000	129.0	4.07%	1939.8	4.15%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-5.055e-01	1.0000	561.0	17.72%	8357.9	17.89%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-4.848e-01	1.0000	730.0	23.06%	10871.2	23.27%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-4.794e-01	1.0000	201.0	6.35%	3023.4	6.47%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	-4.770e-01	1.0000	432.0	13.64%	6458.3	13.82%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-4.728e-01	1.0000	582.0	18.38%	8685.1	18.59%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-4.725e-01	1.0000	80.0	2.53%	1217.1	2.60%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	-4.722e-01	1.0000	126.0	3.98%	1906.8	4.08%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e0	-4.707e-01	1.0000	813.0	25.68%	12108.3	25.91%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-4.609e-01	1.0000	647.0	20.44%	9655.5	20.66%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-4.556e-01	1.0000	340.0	10.74%	5101.4	10.92%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-4.539e-01	1.0000	1437.0	45.39%	21344.2	45.68%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-4.459e-01	1.0000	381.0	12.03%	5715.8	12.23%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-4.438e-01	1.0000	204.0	6.44%	3080.6	6.59%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	-4.437e-01	1.0000	1816.0	57.36%	26943.5	57.66%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-4.414e-01	1.0000	426.0	13.46%	6386.5	13.67%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-4.324e-01	1.0000	245.0	7.74%	3696.6	7.91%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-4.318e-01	1.0000	270.0	8.53%	4069.7	8.71%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e0	-4.298e-01	1.0000	1024.0	32.34%	15257.0	32.65%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e0	-4.260e-01	1.0000	4.0	0.13%	66.7	0.14%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-4.258e-01	1.0000	594.0	18.76%	8889.1	19.02%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-4.221e-01	1.0000	246.0	7.77%	3715.9	7.95%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-4.215e-01	1.0000	334.0	10.55%	5027.5	10.76%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-4.077e-01	1.0000	46.0	1.45%	717.1	1.53%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-4.059e-01	1.0000	384.0	12.13%	5779.0	12.37%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-4.043e-01	1.0000	417.0	13.17%	6271.7	13.42%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-3.996e-01	1.0000	105.0	3.32%	1611.6	3.45%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-3.863e-01	1.0000	262.0	8.28%	3969.3	8.49%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-3.839e-01	1.0000	24.0	0.76%	384.2	0.82%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	-3.744e-01	1.0000	35.0	1.11%	555.0	1.19%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-3.576e-01	1.0000	286.0	9.03%	4341.7	9.29%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-3.546e-01	1.0000	175.0	5.53%	2679.7	5.73%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-3.523e-01	1.0000	84.0	2.65%	1307.8	2.80%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-3.506e-01	1.0000	142.0	4.49%	2184.7	4.68%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-3.471e-01	1.0000	11.0	0.35%	185.9	0.40%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-3.309e-01	1.0000	37.0	1.17%	594.5	1.27%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	-3.097e-01	1.0000	569.0	17.97%	8592.8	18.39%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-3.091e-01	1.0000	104.0	3.28%	1624.4	3.48%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-3.063e-01	1.0000	99.0	3.13%	1549.6	3.32%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-2.963e-01	1.0000	418.0	13.20%	6349.0	13.59%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-2.950e-01	1.0000	36.0	1.14%	586.3	1.25%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-2.943e-01	1.0000	405.0	12.79%	6156.4	13.18%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-2.926e-01	1.0000	105.0	3.32%	1645.4	3.52%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	ATTTTCCATT	1e0	-2.916e-01	1.0000	420.0	13.27%	6382.1	13.66%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	-2.909e-01	1.0000	316.0	9.98%	4826.5	10.33%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-2.729e-01	1.0000	243.0	7.68%	3740.2	8.00%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-2.672e-01	1.0000	258.0	8.15%	3969.2	8.49%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	-2.554e-01	1.0000	134.0	4.23%	2101.9	4.50%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	-2.472e-01	1.0000	3.0	0.09%	61.6	0.13%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	-2.460e-01	1.0000	727.0	22.96%	10997.4	23.54%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-2.428e-01	1.0000	37.0	1.17%	614.2	1.31%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-2.377e-01	1.0000	247.0	7.80%	3821.7	8.18%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	-2.344e-01	1.0000	181.0	5.72%	2825.1	6.05%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-2.296e-01	1.0000	156.0	4.93%	2448.2	5.24%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	-2.275e-01	1.0000	182.0	5.75%	2844.5	6.09%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-2.270e-01	1.0000	1226.0	38.72%	18424.4	39.43%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-2.266e-01	1.0000	796.0	25.14%	12043.9	25.78%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-2.239e-01	1.0000	595.0	18.79%	9050.7	19.37%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-2.177e-01	1.0000	395.0	12.48%	6062.9	12.98%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-2.173e-01	1.0000	83.0	2.62%	1337.3	2.86%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-2.159e-01	1.0000	532.0	16.80%	8116.4	17.37%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	-2.158e-01	1.0000	150.0	4.74%	2364.3	5.06%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo et al.)/Homer	TBGCACGCAA	1e0	-2.135e-01	1.0000	211.0	6.66%	3292.9	7.05%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-2.051e-01	1.0000	987.0	31.17%	14906.8	31.90%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-1.942e-01	1.0000	66.0	2.08%	1083.6	2.32%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.930e-01	1.0000	23.0	0.73%	404.4	0.87%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	-1.835e-01	1.0000	96.0	3.03%	1553.6	3.33%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.792e-01	1.0000	9.0	0.28%	175.5	0.38%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e0	-1.792e-01	1.0000	146.0	4.61%	2324.4	4.97%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e0	-1.773e-01	1.0000	297.0	9.38%	4620.7	9.89%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-1.769e-01	1.0000	642.0	20.28%	9801.8	20.98%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-1.728e-01	1.0000	376.0	11.88%	5816.6	12.45%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	-1.708e-01	1.0000	108.0	3.41%	1745.8	3.74%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski et al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e0	-1.684e-01	1.0000	30.0	0.95%	524.9	1.12%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-1.680e-01	1.0000	3.0	0.09%	69.5	0.15%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	-1.558e-01	1.0000	326.0	10.30%	5078.1	10.87%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-1.557e-01	1.0000	334.0	10.55%	5199.4	11.13%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.535e-01	1.0000	26.0	0.82%	464.9	0.99%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-1.535e-01	1.0000	26.0	0.82%	464.9	0.99%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-1.521e-01	1.0000	34.0	1.07%	594.8	1.27%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-1.519e-01	1.0000	53.0	1.67%	897.9	1.92%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	-1.503e-01	1.0000	10.0	0.32%	198.9	0.43%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	-1.497e-01	1.0000	214.0	6.76%	3384.4	7.24%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-1.478e-01	1.0000	149.0	4.71%	2391.9	5.12%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-1.440e-01	1.0000	182.0	5.75%	2900.8	6.21%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	-1.436e-01	1.0000	257.0	8.12%	4044.6	8.66%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-1.405e-01	1.0000	599.0	18.92%	9203.7	19.70%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	-1.277e-01	1.0000	218.0	6.89%	3465.4	7.42%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	-1.267e-01	1.0000	20.0	0.63%	374.6	0.80%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-1.252e-01	1.0000	75.0	2.37%	1258.0	2.69%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-1.236e-01	1.0000	23.0	0.73%	425.4	0.91%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	-1.228e-01	1.0000	438.0	13.83%	6807.5	14.57%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-1.216e-01	1.0000	208.0	6.57%	3318.8	7.10%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-1.191e-01	1.0000	304.0	9.60%	4785.0	10.24%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-1.167e-01	1.0000	132.0	4.17%	2153.1	4.61%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-1.157e-01	1.0000	179.0	5.65%	2879.4	6.16%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	-1.079e-01	1.0000	310.0	9.79%	4889.3	10.46%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-9.944e-02	1.0000	77.0	2.43%	1307.7	2.80%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	-9.871e-02	1.0000	530.0	16.74%	8230.2	17.61%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-9.784e-02	1.0000	57.0	1.80%	990.6	2.12%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-9.691e-02	1.0000	647.0	20.44%	9992.5	21.39%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-9.673e-02	1.0000	258.0	8.15%	4111.7	8.80%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e0	-9.546e-02	1.0000	20.0	0.63%	386.5	0.83%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-9.118e-02	1.0000	140.0	4.42%	2301.9	4.93%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e0	-9.013e-02	1.0000	307.0	9.70%	4868.8	10.42%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-7.813e-02	1.0000	388.0	12.26%	6120.8	13.10%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-7.313e-02	1.0000	11.0	0.35%	239.9	0.51%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	-6.743e-02	1.0000	491.0	15.51%	7703.2	16.49%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-6.688e-02	1.0000	716.0	22.62%	11094.9	23.74%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-6.530e-02	1.0000	258.0	8.15%	4159.6	8.90%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-6.321e-02	1.0000	18.0	0.57%	368.8	0.79%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-5.731e-02	1.0000	1438.0	45.42%	21875.4	46.82%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	-5.600e-02	1.0000	361.0	11.40%	5755.2	12.32%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-5.543e-02	1.0000	117.0	3.70%	1985.6	4.25%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-5.431e-02	1.0000	647.0	20.44%	10092.7	21.60%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	-5.007e-02	1.0000	499.0	15.76%	7869.3	16.84%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-4.717e-02	1.0000	397.0	12.54%	6328.0	13.54%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-4.390e-02	1.0000	223.0	7.04%	3663.3	7.84%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	-3.947e-02	1.0000	196.0	6.19%	3254.7	6.97%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-3.940e-02	1.0000	88.0	2.78%	1549.3	3.32%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-3.815e-02	1.0000	428.0	13.52%	6828.9	14.61%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-3.749e-02	1.0000	103.0	3.25%	1793.6	3.84%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-3.660e-02	1.0000	62.0	1.96%	1132.0	2.42%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer	CCATATATGGNM	1e0	-3.657e-02	1.0000	118.0	3.73%	2034.4	4.35%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-3.617e-02	1.0000	132.0	4.17%	2257.1	4.83%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	-3.536e-02	1.0000	12.0	0.38%	280.6	0.60%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer	CTGTTTAC	1e0	-3.382e-02	1.0000	809.0	25.55%	12606.4	26.98%
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e0	-3.166e-02	1.0000	55.0	1.74%	1025.4	2.19%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-3.109e-02	1.0000	55.0	1.74%	1026.3	2.20%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	-3.094e-02	1.0000	27.0	0.85%	553.1	1.18%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-2.792e-02	1.0000	254.0	8.02%	4191.5	8.97%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-2.222e-02	1.0000	61.0	1.93%	1144.5	2.45%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-1.964e-02	1.0000	19.0	0.60%	428.5	0.92%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-1.917e-02	1.0000	11.0	0.35%	280.0	0.60%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-1.814e-02	1.0000	71.0	2.24%	1321.9	2.83%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-1.745e-02	1.0000	417.0	13.17%	6758.3	14.46%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer	MACAGGAAGT	1e0	-1.642e-02	1.0000	90.0	2.84%	1639.6	3.51%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-1.632e-02	1.0000	9.0	0.28%	244.5	0.52%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.543e-02	1.0000	351.0	11.09%	5756.5	12.32%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-1.511e-02	1.0000	667.0	21.07%	10586.7	22.66%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-1.255e-02	1.0000	35.0	1.11%	730.1	1.56%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	-1.189e-02	1.0000	366.0	11.56%	6016.2	12.88%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-1.076e-02	1.0000	64.0	2.02%	1233.6	2.64%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-1.060e-02	1.0000	1105.0	34.90%	17222.0	36.86%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-8.610e-03	1.0000	48.0	1.52%	972.9	2.08%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-8.440e-03	1.0000	287.0	9.07%	4823.3	10.32%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-7.828e-03	1.0000	298.0	9.41%	5002.0	10.71%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-6.055e-03	1.0000	8.0	0.25%	248.7	0.53%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-4.671e-03	1.0000	339.0	10.71%	5691.2	12.18%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	-3.657e-03	1.0000	530.0	16.74%	8671.8	18.56%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-2.168e-03	1.0000	213.0	6.73%	3766.2	8.06%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e0	-1.917e-03	1.0000	1592.0	50.28%	24688.3	52.84%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-1.383e-03	1.0000	1509.0	47.66%	23506.5	50.31%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-1.162e-03	1.0000	654.0	20.66%	10697.0	22.89%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	0.000e+00	1.0000	0.0	0.00%	39.2	0.08%